RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA551951", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 7 ✖

tax_kingdom 1

  • Thermotogati · 7 ✖

bioproject 1

  • PRJNA551951 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3071606 3071606 PRJNA551951_S_NODE_7983_length_282_cov_85.506073_g7865_i0 PRJNA551951 7983 282 85.506073 241.12712586 Fretibacterium fastidiosum 651822 Bacteria Bacteria 418 2.2299999999999995e-112   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g7865 i0 94.485 770.588652482269 272 14 96 1 12 282 69065 68794 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 217306 418 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
8173237 8173237 PRJNA551951_S_NODE_12327_length_199_cov_4.310976_g12209_i0 PRJNA551951 12327 199 4.310976 8.57884224 Fretibacterium fastidiosum 651822 Bacteria Bacteria 359 9.09e-95   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g12209 i0 99.492 69.6482412060301 197 1 99 0 1 197 70010 69814 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 13860 359 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
11999436 11999436 PRJNA551951_S_NODE_1430_length_783_cov_3.101604_g1355_i0 PRJNA551951 1430 783 3.101604 24.28555932 Fretibacterium fastidiosum 651822 Bacteria Bacteria 920 0   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g1355 i0 88.83 107.288633461047 752 81 98 3 34 783 70155 69405 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 84007 920 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
14549705 14549705 PRJNA551951_S_NODE_8512_length_270_cov_1.774468_g8394_i0 PRJNA551951 8512 270 1.774468 4.7910636 Fretibacterium fastidiosum 651822 Bacteria Bacteria 449 7.51e-122   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g8394 i0 96.667 235.766666666667 270 9 100 0 1 270 68999 69268 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 63657 449 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
17098059 17098059 PRJNA551951_S_NODE_11494_length_211_cov_2.960227_g11376_i0 PRJNA551951 11494 211 2.960227 6.24607897 Fretibacterium fastidiosum 651822 Bacteria Bacteria 374 3.4799999999999995e-99   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g11376 i0 98.578 37.6445497630332 211 3 100 0 1 211 68817 68607 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 7943 374 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
19646795 19646795 PRJNA551951_S_NODE_10276_length_231_cov_4.285714_g10158_i0 PRJNA551951 10276 231 4.285714 9.89999934 Fretibacterium fastidiosum 651822 Bacteria Bacteria 375 1.08e-99   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g10158 i0 100 27.2554112554113 203 0 88 0 29 231 70171 69969 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 6296 375 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
24746714 24746714 PRJNA551951_S_NODE_12080_length_202_cov_80.335329_g11962_i0 PRJNA551951 12080 202 80.335329 162.27736458 Fretibacterium fastidiosum 651822 Bacteria Bacteria 289 1.23e-73   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g11962 i0 97.619 215.891089108911 168 4 83 0 1 168 68646 68479 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 43610 289 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;