RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA551951", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA551951 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4347661 4347661 PRJNA551951_S_NODE_14524_length_175_cov_1.142857_g14406_i0 PRJNA551951 14524 175 1.142857 1.99999975 Desulfobulbus oralis 1986146 Bacteria Bacteria 322 1.02e-83   NTclustered gi|1343450889|gb|CP021255.1| 1986146 g14406 i0 100 102.268571428571 174 0 99 0 2 175 1583440 1583613 Desulfobulbus oralis strain HOT041/ORNL chromosome, complete genome blastn 17897 322 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oralis
5624400 5624400 PRJNA551951_S_NODE_17485_length_152_cov_1.709402_g17367_i0 PRJNA551951 17485 152 1.709402 2.59829104 Desulfobulbus oralis 1986146 Bacteria Bacteria 281 1.46e-71   NTclustered gi|1343450889|gb|CP021255.1| 1986146 g17367 i0 100 187.671052631579 152 0 100 0 1 152 1583773 1583622 Desulfobulbus oralis strain HOT041/ORNL chromosome, complete genome blastn 28526 281 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oralis
31626770 31626770 PRJNA551951_S_NODE_7836_length_287_cov_1.765873_g7718_i0 PRJNA551951 7836 287 1.765873 5.06805551 Fundidesulfovibrio terrae 2922866 Bacteria Bacteria 45.4 0.00706   NR WP_243363334.1 2922866 g7718 i0 38.9 0.752613240418119 72 40 73.2 2 226 17 478 547 WP_243363334.1 hypothetical protein [Fundidesulfovibrio terrae] diamond 216 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Fundidesulfovibrio Fundidesulfovibrio terrae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;