RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA551951" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA551951 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15823388 15823388 PRJNA551951_S_NODE_5353_length_380_cov_3.457971_g5235_i0 PRJNA551951 5353 380 3.457971 13.1402898 Gammaretrovirus 153135 Viruses Viruses 204 4.57e-58   NR ABU54795.1 11786 g5235 i0 96.1 8.04473684210526 102 4 80.5 0 67 372 657 758 ABU54795.1 gag-pro-pol polyprotein [Murine leukemia virus] diamond 3057 206 0.990291262135922 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
18974392 18974392 PRJNA551951_S_NODE_5635_length_366_cov_46.404834_g5517_i0 PRJNA551951 5635 366 46.404834 169.84169244 Gammaretrovirus 153135 Viruses Viruses 584 2.77e-162   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g5517 i0 100 86.2540983606557 316 0 86 0 28 343 3938 3623 Moloney murine leukemia virus, complete genome blastn 31569 584 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
26966227 26966227 PRJNA551951_S_NODE_3502_length_493_cov_9.272926_g3389_i0 PRJNA551951 3502 493 9.272926 45.71552518 Gammaretrovirus 153135 Viruses Viruses 299 2.47e-92   NR AAA79247.1 11786 g3389 i0 99.3 10.5882352941176 145 1 88.2 0 41 475 219 363 AAA79247.1 putative reverse transcriptase [Murine leukemia virus] diamond 5220 300 0.996666666666667 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;