RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA551951", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA551951 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5624417 5624417 PRJNA551951_S_NODE_2445_length_608_cov_2.931937_g2348_i0 PRJNA551951 2445 608 2.931937 17.82617696 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 191 3.2899999999999986e-55   NR HVL39274.1 2682144 g2348 i0 85.3 2.51644736842105 102 15 50.3 0 320 15 1 102 HVL39274.1 Glu/Leu/Phe/Val dehydrogenase [Fimbriimonadaceae bacterium] diamond 1530 191 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
27520577 27520577 PRJNA551951_S_NODE_9003_length_258_cov_3.946188_g8885_i0 PRJNA551951 9003 258 3.946188 10.18116504 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 79.3 2.2e-16   NR MCC7230780.1 2682144 g8885 i0 46.2 1.76744186046512 78 42 90.7 0 235 2 3 80 MCC7230780.1 hypothetical protein [Fimbriimonadaceae bacterium] diamond 456 79.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;