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contig_metadata

8 rows where bioproject = "PRJNA551951" and tax_clade = "Sar"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA551951 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3071596 3071596 PRJNA551951_S_NODE_7523_length_295_cov_5.203846_g7405_i0 PRJNA551951 7523 295 5.203846 15.3513457 Fragilariopsis cylindrus CCMP11 186039 SAR_Eukaryotes SAR_Eukaryotes 162 6.54e-49   NR OEU22064.1 635003 g7405 i0 87.5 1.95254237288136 96 11 96.6 1 10 294 1 96 OEU22064.1 ribosomal protein S15e [Fragilariopsis cylindrus CCMP1102] diamond 576 162 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis cylindrus
4950947 4950947 PRJNA551951_S_NODE_12964_length_191_cov_7.378205_g12846_i0 PRJNA551951 12964 191 7.378205 14.09237155 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 339 1.13e-88   NTclustered gi|291495599|gb|GU823226.1| 152704 g12846 i0 100 95.8115183246073 183 0 96 0 1 183 1033 851 Uncultured stramenopile clone BCA5F13RJ3F09 18S ribosomal RNA gene, partial sequence blastn 18300 339 1 Eukaryota Sar             uncultured stramenopile
6898580 6898580 PRJNA551951_S_NODE_8106_length_279_cov_3.913934_g7988_i0 PRJNA551951 8106 279 3.913934 10.91987586 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 510 3.5299999999999996e-140   NTclustered gi|363498776|gb|JN662487.1| 120398 g7988 i0 99.642 99.1003584229391 279 1 100 0 1 279 319 41 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27649 510 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
8173235 8173235 PRJNA551951_S_NODE_12247_length_200_cov_3.624242_g12129_i0 PRJNA551951 12247 200 3.624242 7.248484 uncultured Peritrichia 282477 SAR_Eukaryotes SAR_Eukaryotes 351 1.53e-92   NTclustered gi|1151071348|gb|KX926025.1| 282477 g12129 i0 100 94.385 190 0 95 0 11 200 1309 1120 Uncultured Peritrichia clone Peri974F_S_18 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18877 351 1 Eukaryota Sar   Ciliophora Oligohymenophorea       uncultured Peritrichia
14549532 14549532 PRJNA551951_S_NODE_12192_length_201_cov_2.265060_g12074_i0 PRJNA551951 12192 201 2.26506 4.5527706 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 292 9.46e-75   NTclustered gi|512134943|gb|JX178902.1| 1295638 g12074 i0 96.089 87.865671641791 179 7 89 0 1 179 1166 988 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17661 292 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
19646808 19646808 PRJNA551951_S_NODE_11036_length_218_cov_1.409836_g10918_i0 PRJNA551951 11036 218 1.409836 3.07344248 Tribonema minus 303371 SAR_Eukaryotes SAR_Eukaryotes 95.9 9.55e-23   NR KAG5179693.1 303371 g10918 i0 73 1.77522935779817 63 17 86.7 0 29 217 106 168 KAG5179693.1 chloroplast 29 kDa ribonucleoprotein [Tribonema minus] diamond 387 95.9 1 Eukaryota Sar     Xanthophyceae Tribonematales Tribonemataceae Tribonema Tribonema minus
19646864 19646864 PRJNA551951_S_NODE_14856_length_171_cov_2.992647_g14738_i0 PRJNA551951 14856 171 2.992647 5.11742637 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 104 3.9e-18   NTclustered gi|695427108|ref|XM_009531298.1| 67593 g14738 i0 83.478 2.01169590643275 115 15 66 4 38 150 7 119 Phytophthora sojae hypothetical protein mRNA blastn 344 104 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
30851059 30851059 PRJNA551951_S_NODE_14734_length_172_cov_3.722628_g14616_i0 PRJNA551951 14734 172 3.722628 6.40292016 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 117 1.83e-32   NR GFH46906.1 426638 g14616 i0 98.1 1.88372093023256 54 1 94.2 0 172 11 58 111 GFH46906.1 hypothetical protein CTEN210_03380 [Chaetoceros tenuissimus] diamond 324 117 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;