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contig_metadata

20 rows where bioproject = "PRJNA550047" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 20 ✖

tax_kingdom 1

bioproject 1

  • PRJNA550047 · 20 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3067000 3067000 PRJNA550047_P_NODE_410663_length_261_cov_3.861702_g408691_i0 PRJNA550047 410663 261 3.861702 10.07904222 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 151 2.6899999999999998e-42   NR WP_299080674.1 1678694 g408691 i0 85.1 1.08045977011494 94 6 98.9 1 260 3 99 192 WP_299080674.1 hypothetical protein [uncultured Fretibacterium sp.] diamond 282 151 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
6891587 6891587 PRJNA550047_P_NODE_224826_length_301_cov_8.807018_g222857_i0 PRJNA550047 224826 301 8.807018 26.50912418 Fretibacterium fastidiosum 651822 Bacteria Bacteria 355 1.91e-93   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g222857 i0 88.699 106.913621262458 292 32 97 1 1 292 70152 69862 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 32181 355 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
6894997 6894997 PRJNA550047_P_NODE_495986_length_231_cov_39.272152_g494013_i0 PRJNA550047 495986 231 39.272152 90.71867112 Synergistetes bacterium oral taxon 363 713037 Bacteria Bacteria 422 1.37e-113   NTclustered gi|285800810|gb|GU410792.1| 713037 g494013 i0 99.567 102.004329004329 231 1 100 0 1 231 29 259 Synergistetes bacterium oral taxon 363 clone AT057 16S ribosomal RNA gene, partial sequence blastn 23563 422 1 Bacteria   Thermotogati Synergistota         Synergistetes bacterium oral taxon 363
9442260 9442260 PRJNA550047_P_NODE_233108_length_301_cov_4.894737_g231139_i0 PRJNA550047 233108 301 4.894737 14.73315837 Fretibacterium fastidiosum 651822 Bacteria Bacteria 525 1.3699999999999995e-144   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g231139 i0 98.328 499.063122923588 299 5 99 0 3 301 67852 68150 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 150218 525 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
12600389 12600389 PRJNA550047_P_NODE_402430_length_264_cov_5.989529_g400458_i0 PRJNA550047 402430 264 5.989529 15.81235656 Bacteria 2 Bacteria Bacteria 486 5.579999999999999e-133   NTclustered gi|401555873|gb|JX010924.1| 447826 g400458 i0 100 99.625 263 0 99 0 1 263 303 41 Uncultured Synergistetes bacterium clone 1P15 16S ribosomal RNA gene, partial sequence blastn 26301 486 1 Bacteria   Thermotogati Synergistota         uncultured Synergistota bacterium
14543736 14543736 PRJNA550047_P_NODE_310552_length_296_cov_3.928251_g308583_i0 PRJNA550047 310552 296 3.928251 11.62762296 Synergistaceae bacterium 2053624 Bacteria Bacteria 100 3.59e-23   NR NLK18870.1 2053624 g308583 i0 89.8 0.496621621621622 49 5 49.7 0 296 150 204 252 NLK18870.1 phosphoenolpyruvate hydrolase family protein [Synergistaceae bacterium] diamond 147 100 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
19639160 19639160 PRJNA550047_P_NODE_149296_length_345_cov_4.764706_g147336_i0 PRJNA550047 149296 345 4.764706 16.4382357 Pyramidobacter piscolens 638849 Bacteria Bacteria 63.9 1.51e-5   NTclustered gi|2188906985|dbj|AP025585.1| 638849 g147336 i0 93.182 0.359420289855072 44 2 13 1 301 344 1075428 1075470 Pyramidobacter piscolens CE91-St28 DNA, complete genome blastn 124 63.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter piscolens
26871680 26871680 PRJNA550047_P_NODE_57401_length_345_cov_16.077206_g55441_i0 PRJNA550047 57401 345 16.077206 55.4663607 Fretibacterium 1434006 Bacteria Bacteria 95.9 2.51e-20   NR WP_299300001.1 1678694 g55441 i0 94 0.869565217391304 50 3 43.5 0 151 2 427 476 WP_299300001.1 nucleoside kinase [uncultured Fretibacterium sp.] diamond 300 95.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
27078131 27078131 PRJNA550047_P_NODE_479822_length_237_cov_8.481707_g477849_i0 PRJNA550047 479822 237 8.481707 20.10164559 Aminobacterium sp. 1872491 Bacteria Bacteria 112 8.4e-28   NR HCA40675.1 1872491 g477849 i0 77.8 0.911392405063291 72 16 91.1 0 235 20 241 312 HCA40675.1 hypothetical protein [Aminobacterium sp.] diamond 216 112 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium Aminobacterium sp.
28214878 28214878 PRJNA550047_P_NODE_487426_length_234_cov_18.105590_g485453_i0 PRJNA550047 487426 234 18.10559 42.3670806 Aminivibrio sp. 1872489 Bacteria Bacteria 137 4.7e-37   NR WP_367340975.1 1872489 g485453 i0 84.4 1.97435897435897 77 12 98.7 0 232 2 252 328 WP_367340975.1 type IV pilus twitching motility protein PilT [Aminivibrio sp.] diamond 462 137 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.
28751822 28751822 PRJNA550047_P_NODE_430107_length_253_cov_22.577778_g428135_i0 PRJNA550047 430107 253 22.577778 57.12177834 Synergistaceae bacterium 2053624 Bacteria Bacteria 80.9 8.59e-16   NR MBQ6739169.1 2053624 g428135 i0 68.9 1.44664031620553 61 19 72.3 0 69 251 1 61 MBQ6739169.1 hypothetical protein [Synergistaceae bacterium] diamond 366 80.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
29524400 29524400 PRJNA550047_P_NODE_529650_length_220_cov_13.108844_g527677_i0 PRJNA550047 529650 220 13.108844 28.8394568 Synergistales 649776 Bacteria Bacteria 146 1.19e-39   NR WP_367339441.1 1872489 g527677 i0 98.6 1.96363636363636 72 1 98.2 0 5 220 269 340 WP_367339441.1 glutathione ABC transporter substrate-binding protein [Aminivibrio sp.] diamond 432 146 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.
29603977 29603977 PRJNA550047_P_NODE_327990_length_293_cov_3.363636_g326020_i0 PRJNA550047 327990 293 3.363636 9.85545348 Aminivibrio sp. 1872489 Bacteria Bacteria 185 2.769999999999999e-55   NR WP_367337857.1 1872489 g326020 i0 100 0.993174061433447 97 0 99.3 0 292 2 82 178 WP_367337857.1 transaldolase [Aminivibrio sp.] diamond 291 185 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.
29825288 29825288 PRJNA550047_P_NODE_561391_length_210_cov_5.379562_g559418_i0 PRJNA550047 561391 210 5.379562 11.2970802 Synergistaceae bacterium 2053624 Bacteria Bacteria 142 1.69e-40   NR MDD3390087.1 2053624 g559418 i0 100 0.985714285714286 69 0 98.6 0 209 3 134 202 MDD3390087.1 hypothetical protein [Synergistaceae bacterium] diamond 207 142 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30583389 30583389 PRJNA550047_P_NODE_377053_length_274_cov_6.034826_g375081_i0 PRJNA550047 377053 274 6.034826 16.53542324 Aminivibrio sp. 1872489 Bacteria Bacteria 124 9.799999999999999e-35   NR WP_367338755.1 1872489 g375081 i0 100 0.635036496350365 58 0 63.5 0 1 174 31 88 WP_367338755.1 hypothetical protein [Aminivibrio sp.] diamond 174 124 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.
30693060 30693060 PRJNA550047_P_NODE_98673_length_345_cov_8.566176_g96713_i0 PRJNA550047 98673 345 8.566176 29.5533072 Aminivibrio 1427172 Bacteria Bacteria 172 2.55e-48   NR WP_367338113.1 1872489 g96713 i0 60.6 2.8695652173913 165 14 99.1 1 3 344 372 536 WP_367338113.1 gamma-glutamyltransferase [Aminivibrio sp.] diamond 990 172 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.
30804808 30804808 PRJNA550047_P_NODE_428654_length_254_cov_8.740331_g426682_i0 PRJNA550047 428654 254 8.740331 22.20044074 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 114 2.85e-27   NR WP_298779375.1 1678694 g426682 i0 67.5 0.980314960629921 83 26 98 1 4 252 775 856 WP_298779375.1 Synerg-CTERM sorting domain-containing protein [uncultured Fretibacterium sp.] diamond 249 114 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
31342152 31342152 PRJNA550047_P_NODE_595736_length_199_cov_10.349206_g593763_i0 PRJNA550047 595736 199 10.349206 20.59491994 Synergistaceae bacterium 2053624 Bacteria Bacteria 45.1 0.00142   NR MDI3533296.1 2053624 g593763 i0 45.3 0.798994974874372 53 29 79.9 0 11 169 55 107 MDI3533296.1 hypothetical protein [Synergistaceae bacterium] diamond 159 45.1 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
31721630 31721630 PRJNA550047_P_NODE_566197_length_208_cov_12.066667_g564224_i0 PRJNA550047 566197 208 12.066667 25.09866736 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 157 3.9199999999999996e-46   NR WP_299301585.1 1678694 g564224 i0 98.5 0.980769230769231 68 1 98.1 0 206 3 88 155 WP_299301585.1 tRNA pseudouridine(38-40) synthase TruA [uncultured Fretibacterium sp.] diamond 204 157 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
32259753 32259753 PRJNA550047_P_NODE_379698_length_273_cov_5.470000_g377726_i0 PRJNA550047 379698 273 5.47 14.9331 Fretibacterium sp. 2699746 Bacteria Bacteria 182 3.49e-57   NR MFC2594412.1 2699746 g377726 i0 98.9 0.989010989010989 90 1 98.9 0 271 2 13 102 MFC2594412.1 hypothetical protein [Fretibacterium sp.] diamond 270 182 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;