RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA550047", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 6 ✖

tax_phylum 1

  • Negarnaviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA550047 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
518201 518201 PRJNA550047_P_NODE_594001_length_199_cov_406.952381_g592028_i0 PRJNA550047 594001 199 406.952381 809.83523819 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 121 4.669999999999999e-23   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g592028 i0 98.551 1.8643216080402 69 0 34 1 1 68 3 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 371 121 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
11996215 11996215 PRJNA550047_P_NODE_508270_length_227_cov_464.493506_g506297_i0 PRJNA550047 508270 227 464.493506 1054.40025862 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 124 4.22e-24   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g506297 i0 98.592 1.59911894273128 71 0 31 1 27 96 1 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 363 124 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
14543104 14543104 PRJNA550047_P_NODE_265432_length_299_cov_226.154867_g263463_i0 PRJNA550047 265432 299 226.154867 676.20305233 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 124 5.81e-24   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g263463 i0 98.592 1.47826086956522 71 0 23 1 44 113 71 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 442 124 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
17094818 17094818 PRJNA550047_P_NODE_505154_length_228_cov_1689.458065_g503181_i0 PRJNA550047 505154 228 1689.458065 3851.9643882 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 132 2.54e-26   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g503181 i0 100 3.17982456140351 71 0 31 0 132 202 71 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 725 132 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
29225642 29225642 PRJNA550047_P_NODE_220109_length_301_cov_11.872807_g218140_i0 PRJNA550047 220109 301 11.872807 35.73714907 Hubei chuvirus-like virus 3 1922858 Viruses Viruses 59.3 1.05e-7   NR YP_009337091.1 1922858 g218140 i0 30.6 1.1063122923588 111 58 91.7 2 301 26 260 370 YP_009337091.1 hypothetical protein [Hubei chuvirus-like virus 3] diamond 333 59.3 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Scarabeuvirus Scarabeuvirus dentati
30029729 30029729 PRJNA550047_P_NODE_302611_length_297_cov_5.227679_g300642_i0 PRJNA550047 302611 297 5.227679 15.52620663 Alphainfluenzavirus 197911 Viruses Viruses 41.6 0.0357   NR AGL58074.1 1323043 g300642 i0 45 0.808080808080808 40 22 40.4 0 170 51 26 65 AGL58074.1 PB1-F2 protein [Influenza A virus (A/ruddy turnstone/Delaware/AI03-163/2003(H9N8))] diamond 240 42 0.990476190476191 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;