RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA550047" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA550047 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17700479 17700479 PRJNA550047_P_NODE_95554_length_345_cov_8.871324_g93594_i0 PRJNA550047 95554 345 8.871324 30.6060678 Metazoa 33208 Echinodermata other_Eukaryota 52.8 0.033   NTclustered gi|2037984777|ref|XM_041605043.1| 7654 g93594 i0 100 0.16231884057971 28 0 8 0 14 41 157 184 PREDICTED: Lytechinus variegatus PE-PGRS family protein PE_PGRS16-like (LOC121412137), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
18366010 18366010 PRJNA550047_P_NODE_273535_length_299_cov_8.800885_g271566_i0 PRJNA550047 273535 299 8.800885 26.31464615 Acanthaster planci 133434 Echinodermata other_Eukaryota 54.7 0.008   NTclustered gi|1229180122|ref|XM_022247899.1| 133434 g271566 i0 100 0.096989966555184 29 0 10 0 113 141 1046 1018 PREDICTED: Acanthaster planci uncharacterized LOC110986205 (LOC110986205), transcript variant X1, mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
27124054 27124054 PRJNA550047_P_NODE_317542_length_295_cov_3.549550_g315573_i0 PRJNA550047 317542 295 3.54955 10.4711725 Metazoa 33208 Echinodermata other_Eukaryota 63.2 4.63e-9   NR XP_030854130.1 7668 g315573 i0 54 3.05084745762712 50 23 50.8 0 294 145 121 170 XP_030854130.1 chromatin assembly factor 1 subunit B [Strongylocentrotus purpuratus] diamond 900 63.5 0.995275590551181 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
29067812 29067812 PRJNA550047_P_NODE_591288_length_200_cov_17.779528_g589315_i0 PRJNA550047 591288 200 17.779528 35.559056 Diadema antillarum 105358 Echinodermata other_Eukaryota 47 6.84e-4   NR XP_071508984.1 105358 g589315 i0 47.1 0.765 51 24 76.5 1 195 43 623 670 XP_071508984.1 uncharacterized protein [Diadema antillarum] diamond 153 47 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
29745094 29745094 PRJNA550047_P_NODE_593930_length_200_cov_4.267717_g591957_i0 PRJNA550047 593930 200 4.267717 8.535434 Patiria 35076 Echinodermata other_Eukaryota 42.7 0.0213   NR BAL73081.1 7594 g591957 i0 69.2 1.47 26 8 39 0 145 68 113 138 BAL73081.1 vascular endothelial growth factor receptor, partial [Patiria pectinifera] diamond 294 42.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria pectinifera
31468858 31468858 PRJNA550047_P_NODE_92196_length_345_cov_9.213235_g90236_i0 PRJNA550047 92196 345 9.213235 31.78566075 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 52.4 5.79e-6   NR PIK55974.1 307972 g90236 i0 53.7 0.356521739130435 41 18 35.7 1 206 328 9 48 PIK55974.1 hypothetical protein BSL78_07122 [Apostichopus japonicus] diamond 123 52.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
32400906 32400906 PRJNA550047_P_NODE_87439_length_345_cov_9.750000_g85479_i0 PRJNA550047 87439 345 9.75 33.6375 root 1 Root_unresolved Root_unresolved 51.2 1.05e-4   NR XP_022106682.1 133434 g85479 i0 56.1 2.15652173913043 41 18 35.7 0 203 325 70 110 XP_022106682.1 epimerase family protein SDR39U1-like [Acanthaster planci] diamond 744 51.6 0.992248062015504 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
32779242 32779242 PRJNA550047_P_NODE_295960_length_297_cov_18.236607_g293991_i0 PRJNA550047 295960 297 18.236607 54.16272279 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 1.91e-4   NR XP_033126136.1 1529436 g293991 i0 52.2 0.929292929292929 46 22 46.5 0 3 140 124 169 XP_033126136.1 transient receptor potential cation channel subfamily A member 1-like [Anneissia japonica] diamond 276 50.4 0.994047619047619 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;