RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where bioproject = "PRJNA550047" and tax_phylum = "Candidatus Rokuibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA550047 · 17 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1789137 1789137 PRJNA550047_P_NODE_196982_length_343_cov_27.955556_g195021_i0 PRJNA550047 196982 343 27.955556 95.88755708 Candidatus Rokubacteria bacterium RIFCSPLOWO2_ 1802107 Bacteria Bacteria 142 1.61e-36   NR OGL11005.1 1802107 g195021 i0 56.7 1.2332361516035 141 32 98 1 339 4 173 313 OGL11005.1 MAG: hypothetical protein A3I14_02055 [Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_73_56] diamond 423 142 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_73_56
10721314 10721314 PRJNA550047_P_NODE_500009_length_230_cov_12.388535_g498036_i0 PRJNA550047 500009 230 12.388535 28.4936305 Bacillati 1783272 Bacteria Bacteria 95.9 6.230000000000001e-21   NR MBI2526837.1 2053607 g498036 i0 60.5 10.7869565217391 76 30 99.1 0 2 229 487 562 MBI2526837.1 sigma 54-interacting transcriptional regulator [Candidatus Rokuibacteriota bacterium] diamond 2481 96.3 0.995846313603323 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
11991440 11991440 PRJNA550047_P_NODE_118950_length_345_cov_6.849265_g116990_i0 PRJNA550047 118950 345 6.849265 23.62996425 root 1 Root_unresolved Root_unresolved 68.6 6.75e-11   NR MBI2529488.1 2053607 g116990 i0 67.3 2.1304347826087 49 16 42.6 0 1 147 115 163 MBI2529488.1 SDR family oxidoreductase [Candidatus Rokuibacteriota bacterium] diamond 735 68.9 0.995645863570392 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
15149782 15149782 PRJNA550047_P_NODE_470212_length_240_cov_13.994012_g468239_i0 PRJNA550047 470212 240 13.994012 33.5856288 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 154 1.61e-42   NR PYO07565.1 2053607 g468239 i0 93.8 1 80 5 100 0 1 240 321 400 PYO07565.1 MAG: hypothetical protein DMD75_20415 [Candidatus Rokuibacteriota bacterium] diamond 240 154 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
16423837 16423837 PRJNA550047_P_NODE_339193_length_289_cov_9.134259_g337223_i0 PRJNA550047 339193 289 9.134259 26.39800851 Bacteria 2 Bacteria Bacteria 73.2 1.33e-12   NR MDO8479158.1 2053607 g337223 i0 78 1.55709342560554 50 10 50.9 1 289 143 528 577 MDO8479158.1 adenylate/guanylate cyclase domain-containing protein [Candidatus Rokuibacteriota bacterium] diamond 450 73.2 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
23468457 23468457 PRJNA550047_P_NODE_413219_length_260_cov_4.422460_g411247_i0 PRJNA550047 413219 260 4.42246 11.498396 Candidatus Rokubacteria bacterium GWC2_7 1802098 Bacteria Bacteria 58.2 1.5e-7   NR OGK91209.1 1802098 g411247 i0 57.4 1.08461538461538 47 20 54.2 0 1 141 275 321 OGK91209.1 MAG: hypothetical protein A2X51_07040 [Candidatus Rokubacteria bacterium GWC2_70_24] diamond 282 58.2 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokubacteria bacterium GWC2_70_24
26951219 26951219 PRJNA550047_P_NODE_122762_length_345_cov_6.566176_g120802_i0 PRJNA550047 122762 345 6.566176 22.6533072 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 115 3.7400000000000006e-27   NR PYM06291.1 2053607 g120802 i0 54.2 1.13913043478261 131 42 98.3 3 343 5 714 844 PYM06291.1 MAG: hypothetical protein DMD82_09150 [Candidatus Rokuibacteriota bacterium] diamond 393 115 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
27046618 27046618 PRJNA550047_P_NODE_73762_length_345_cov_11.687500_g71802_i0 PRJNA550047 73762 345 11.6875 40.321875 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 73.6 9.5e-13   NR PYN81286.1 2053607 g71802 i0 68.1 0.408695652173913 47 14 40 1 345 208 212 258 PYN81286.1 MAG: hypothetical protein DMD97_02630 [Candidatus Rokuibacteriota bacterium] diamond 141 73.6 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
27282507 27282507 PRJNA550047_P_NODE_103843_length_345_cov_8.091912_g101883_i0 PRJNA550047 103843 345 8.091912 27.9170964 Pseudomonadati 3379134 Bacteria Bacteria 70.1 2.07e-11   NR PYM25906.1 2053607 g101883 i0 76.1 2.80869565217391 46 11 40 0 142 5 2 47 PYM25906.1 MAG: nucleoside-diphosphate sugar epimerase [Candidatus Rokuibacteriota bacterium] diamond 969 70.1 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
27741782 27741782 PRJNA550047_P_NODE_389144_length_269_cov_7.826531_g387172_i0 PRJNA550047 389144 269 7.826531 21.05336839 Candidatus Rokubacteria bacterium 13_1_4 1805366 Bacteria Bacteria 42 0.0488   NR OLB96088.1 1805366 g387172 i0 32.6 0.992565055762082 89 56 99.3 2 1 267 57 141 OLB96088.1 MAG: hypothetical protein AUH30_13725 [Candidatus Rokubacteria bacterium 13_1_40CM_68_15] diamond 267 42 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokubacteria bacterium 13_1_40CM_68_15
28372833 28372833 PRJNA550047_P_NODE_326866_length_293_cov_6.377273_g324896_i0 PRJNA550047 326866 293 6.377273 18.68540989 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 63.5 2.7e-9   NR PYN08770.1 2053607 g324896 i0 60 1.55631399317406 50 20 51.2 0 3 152 97 146 PYN08770.1 MAG: cytochrome c oxidase subunit II [Candidatus Rokuibacteriota bacterium] diamond 456 63.5 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
28593996 28593996 PRJNA550047_P_NODE_261827_length_300_cov_4.405286_g259858_i0 PRJNA550047 261827 300 4.405286 13.215858 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 43.1 0.0481   NR PYO56778.1 2053607 g259858 i0 46.7 0.6 60 26 59 2 225 49 21 75 PYO56778.1 MAG: pseudouridine synthase [Candidatus Rokuibacteriota bacterium] diamond 180 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
28861154 28861154 PRJNA550047_P_NODE_237708_length_300_cov_26.638767_g235739_i0 PRJNA550047 237708 300 26.638767 79.916301 Bacteria 2 Bacteria Bacteria 66.6 2.92e-10   NR MBI3456541.1 2053607 g235739 i0 46.6 2.34 58 31 58 0 7 180 251 308 MBI3456541.1 DegQ family serine endoprotease [Candidatus Rokuibacteriota bacterium] diamond 702 67 0.994029850746269 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
29635622 29635622 PRJNA550047_P_NODE_533970_length_219_cov_6.520548_g531997_i0 PRJNA550047 533970 219 6.520548 14.28000012 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 43.1 0.0197   NR PYO19208.1 2053607 g531997 i0 39 0.808219178082192 59 36 80.8 0 3 179 470 528 PYO19208.1 MAG: undecaprenyl-phosphate glucose phosphotransferase [Candidatus Rokuibacteriota bacterium] diamond 177 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
30078008 30078008 PRJNA550047_P_NODE_522692_length_223_cov_4.766667_g520719_i0 PRJNA550047 522692 223 4.766667 10.62966741 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 100 5.769999999999999e-24   NR PYN91713.1 2053607 g520719 i0 63 1.96412556053812 73 27 98.2 0 3 221 180 252 PYN91713.1 MAG: hypothetical protein DMD89_30030 [Candidatus Rokuibacteriota bacterium] diamond 438 100 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
31451774 31451774 PRJNA550047_P_NODE_259596_length_300_cov_5.286344_g257627_i0 PRJNA550047 259596 300 5.286344 15.859032 Bacteria 2 Bacteria Bacteria 67.8 1.1e-10   NR PYN21067.1 2053607 g257627 i0 80.4 4.62 46 9 46 0 293 156 76 121 PYN21067.1 MAG: AtzE family amidohydrolase [Candidatus Rokuibacteriota bacterium] diamond 1386 68.2 0.994134897360704 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
31974778 31974778 PRJNA550047_P_NODE_593378_length_200_cov_6.629921_g591405_i0 PRJNA550047 593378 200 6.629921 13.259842 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 69.3 3.53e-13   NR PYN41979.1 2053607 g591405 i0 50.8 1.935 65 32 97.5 0 2 196 24 88 PYN41979.1 MAG: hypothetical protein DMD95_18095 [Candidatus Rokuibacteriota bacterium] diamond 387 69.3 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;