RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA550047", tax_kingdom = "Shotokuvirae" and tax_phylum = "Cressdnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Cressdnaviricota · 3 ✖

tax_kingdom 1

  • Shotokuvirae · 3 ✖

bioproject 1

  • PRJNA550047 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1791943 1791943 PRJNA550047_P_NODE_429882_length_254_cov_2.469613_g427910_i0 PRJNA550047 429882 254 2.469613 6.27281702 Cyclovirus sp. 1983780 Viruses Viruses 448 2.5199999999999996e-121   NTclustered gi|2577287949|gb|OR271552.1| 1983780 g427910 i0 98.425 6 254 4 100 0 1 254 389 642 Cyclovirus sp. isolate NHP40/IT, complete genome blastn 1524 448 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Cirlivirales Circoviridae Cyclovirus Cyclovirus sp.
19639398 19639398 PRJNA550047_P_NODE_169556_length_345_cov_3.408088_g167596_i0 PRJNA550047 169556 345 3.408088 11.7579036 Circovirus porcine2 3048279 Viruses Viruses 75 6.97e-9   NTclustered gi|696825156|gb|KM259933.1| 85708 g167596 i0 85.714 0.202898550724638 70 10 20 0 76 145 159 228 Porcine circovirus-2 isolate ZJ-R, truncated complete genome blastn 70 75 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Cirlivirales Circoviridae Circovirus Circovirus porcine2
22190915 22190915 PRJNA550047_P_NODE_25118_length_450_cov_8.469496_g23205_i0 PRJNA550047 25118 450 8.469496 38.112732 Cyclovirus sp. 1983780 Viruses Viruses 322 3.01e-83   NTclustered gi|2577287949|gb|OR271552.1| 1983780 g23205 i0 100 11.6555555555556 174 0 98 0 277 450 183 356 Cyclovirus sp. isolate NHP40/IT, complete genome blastn 5245 322 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Cirlivirales Circoviridae Cyclovirus Cyclovirus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;