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contig_metadata

13 rows where bioproject = "PRJNA550047", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 13 ✖

tax_kingdom 1

  • Orthornavirae · 13 ✖

bioproject 1

  • PRJNA550047 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2395850 2395850 PRJNA550047_P_NODE_20842_length_481_cov_8.460784_g18945_i0 PRJNA550047 20842 481 8.460784 40.69637104 Tobamovirus 12234 Viruses Viruses 887 0   NTclustered gi|937502902|gb|KR108206.1| 12239 g18945 i0 100 98.3284823284823 480 0 99 0 1 480 4400 4879 Pepper mild mottle virus isolate RP, complete genome blastn 47296 887 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
5621423 5621423 PRJNA550047_P_NODE_531765_length_219_cov_22.253425_g529792_i0 PRJNA550047 531765 219 22.253425 48.73500075 Tobamovirus capsici 3432865 Viruses Viruses 399 6.009999999999999e-107   NTclustered gi|2432631556|gb|OQ198319.1| 12239 g529792 i0 99.543 93.2328767123288 219 1 100 0 1 219 4923 5141 MAG: Pepper mild mottle virus isolate CTS36_2_PPMoV coat protein genes, complete cds blastn 20418 399 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
11323868 11323868 PRJNA550047_P_NODE_286629_length_298_cov_11.133333_g284660_i0 PRJNA550047 286629 298 11.133333 33.17733234 Tobamovirus 12234 Viruses Viruses 278 4.2e-70   NTclustered gi|20177424|ref|NC_003630.1| 12239 g284660 i0 99.346 96.6979865771812 153 1 100 0 146 298 4091 3939 Pepper mild mottle virus, complete genome blastn 28816 278 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
13267889 13267889 PRJNA550047_P_NODE_244091_length_300_cov_12.850220_g242122_i0 PRJNA550047 244091 300 12.85022 38.55066 Tobamovirus viridimaculae 3432895 Viruses Viruses 534 2.2699999999999998e-147   NTclustered gi|2184811942|gb|MW430120.1| 12235 g242122 i0 99 100 300 0 100 1 1 300 4591 4887 Cucumber green mottle mosaic virus isolate WA-3, complete genome blastn 30000 534 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus viridimaculae
13875892 13875892 PRJNA550047_P_NODE_525871_length_221_cov_22.459459_g523898_i0 PRJNA550047 525871 221 22.459459 49.63540439 Tobamovirus 12234 Viruses Viruses 399 6.069999999999998e-107   NTclustered gi|1052138734|gb|KU646837.1| 12239 g523898 i0 99.543 98.710407239819 219 1 99 0 3 221 331 549 Pepper mild mottle virus isolate Fengcheng, complete genome blastn 21815 399 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
17697891 17697891 PRJNA550047_P_NODE_11494_length_571_cov_10.451807_g9683_i0 PRJNA550047 11494 571 10.451807 59.67981797 Tobamovirus 12234 Viruses Viruses 1024 0   NTclustered gi|1145800961|gb|KX399389.1| 12239 g9683 i0 99.121 93.6077057793345 569 5 99 0 2 570 1632 1064 Pepper mild mottle virus isolate J47, complete genome blastn 53450 1024 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
18971492 18971492 PRJNA550047_P_NODE_128915_length_345_cov_6.125000_g126955_i0 PRJNA550047 128915 345 6.125 21.13125 Tobamovirus 12234 Viruses Viruses 318 2.92e-82   NTclustered gi|1950992325|gb|MW373851.1| 12239 g126955 i0 100 88.6 172 0 94 0 174 345 1632 1461 Pepper mild mottle virus isolate GMD-TA, complete genome. blastn 30567 318 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
19639898 19639898 PRJNA550047_P_NODE_206936_length_323_cov_5.024000_g204968_i0 PRJNA550047 206936 323 5.024 16.22752 Tolivirales sp. 2809914 Viruses Viruses 597 3.11e-166   NTclustered gi|2647550456|gb|OR843944.1| 2809914 g204968 i0 100 1 323 0 100 0 1 323 1010 688 Tolivirales sp. strain MR233-17E/34903 RNA-dependent RNA polymerase gene, partial cds blastn 323 597 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales     Tolivirales sp.
20918257 20918257 PRJNA550047_P_NODE_413637_length_260_cov_2.042781_g411665_i0 PRJNA550047 413637 260 2.042781 5.3112306 Alphaendornavirus capsici 3426171 Viruses Viruses 473 4.27e-129   NTclustered gi|390608729|gb|JQ951943.1| 354328 g411665 i0 99.614 31.8769230769231 259 1 99 0 2 260 11758 12016 Bell pepper endornavirus strain IS RNA-dependent RNA polymerase (RdRp) gene, complete cds blastn 8288 473 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae Alphaendornavirus Alphaendornavirus capsici
24073055 24073055 PRJNA550047_P_NODE_338239_length_289_cov_18.805556_g336269_i0 PRJNA550047 338239 289 18.805556 54.34805684 Tobamovirus 12234 Viruses Viruses 520 6.1e-143   NTclustered gi|66863602|dbj|AB113116.1| 12239 g336269 i0 98.969 94.4221453287197 291 1 100 1 1 289 3614 3324 Pepper mild mottle virus gene for 126k protein, complete cds, strain: Pa18 blastn 27288 520 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
24073579 24073579 PRJNA550047_P_NODE_446039_length_248_cov_10.280000_g444067_i0 PRJNA550047 446039 248 10.28 25.4944 Tobamovirus 12234 Viruses Viruses 457 4.07e-124   NTclustered gi|20177424|ref|NC_003630.1| 12239 g444067 i0 100 93.8306451612903 247 0 99 0 1 247 3590 3836 Pepper mild mottle virus, complete genome blastn 23270 457 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
30362863 30362863 PRJNA550047_P_NODE_442212_length_249_cov_16.284091_g440240_i0 PRJNA550047 442212 249 16.284091 40.54738659 Virgaviridae-like virus 4 3076992 Viruses Viruses 92 1.83e-19   NR WPR18843.1 3076992 g440240 i0 60 1.02409638554217 85 29 98.8 2 4 249 44 126 WPR18843.1 MAG: RNA-dependent RNA polymerase [Virgaviridae-like virus 4] diamond 255 92 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae   Virgaviridae-like virus 4
31658060 31658060 PRJNA550047_P_NODE_281297_length_299_cov_3.407080_g279328_i0 PRJNA550047 281297 299 3.40708 10.1871692 Erysiphe necator associated flexivirus 3 2743100 Viruses Viruses 114 7.27e-27   NR QKN22675.1 2743100 g279328 i0 57.3 1.03344481605351 103 40 99.3 1 3 299 539 641 QKN22675.1 RNA-dependent RNA polymerase [Erysiphe necator associated flexivirus 3] diamond 309 114 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales     Erysiphe necator associated flexivirus 3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;