RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA550047", tax_kingdom = "Metazoa" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 14 ✖

tax_kingdom 1

  • Metazoa · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA550047 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21522491 21522491 PRJNA550047_P_NODE_212517_length_302_cov_11.362445_g210548_i0 PRJNA550047 212517 302 11.362445 34.3145839 Metazoa 33208 Rotifera other_Eukaryota 279 1.18e-70   NTclustered gi|1399047|gb|U41281.1|PAU41281 44582 g210548 i0 100 74.794701986755 151 0 94 0 1 151 417 267 Philodina acuticornis 18S rRNA gene blastn 22588 279 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina acuticornis
23469508 23469508 PRJNA550047_P_NODE_496679_length_231_cov_14.867089_g494706_i0 PRJNA550047 496679 231 14.867089 34.34297559 Anomopus telphusae 338910 Rotifera other_Eukaryota 405 1.38e-108   NTclustered gi|72153748|gb|DQ089741.1| 338910 g494706 i0 98.268 43.974025974026 231 4 100 0 1 231 2447 2677 Anomopus telphusae 28S ribosomal RNA gene, partial sequence blastn 10158 405 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Anomopus Anomopus telphusae
26793271 26793271 PRJNA550047_P_NODE_344781_length_287_cov_7.247664_g342811_i0 PRJNA550047 344781 287 7.247664 20.80079568 Adineta steineri 433720 Rotifera other_Eukaryota 126 1.7599999999999998e-31   NR CAF3916464.1 433720 g342811 i0 75.3 2.2787456445993 73 18 76.3 0 285 67 122 194 CAF3916464.1 unnamed protein product [Adineta steineri] diamond 654 126 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta steineri
27409088 27409088 PRJNA550047_P_NODE_27883_length_433_cov_11.266667_g25961_i0 PRJNA550047 27883 433 11.266667 48.78466811 Rotaria 231623 Rotifera other_Eukaryota 149 6.12e-41   NR CAF4218272.1 392033 g25961 i0 84.1 3.97690531177829 82 13 56.8 0 246 1 164 245 CAF4218272.1 unnamed protein product, partial [Rotaria sordida] diamond 1722 149 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sordida
27535202 27535202 PRJNA550047_P_NODE_521243_length_223_cov_11.046667_g519270_i0 PRJNA550047 521243 223 11.046667 24.63406741 Eurotatoria 2816136 Rotifera other_Eukaryota 124 4.6699999999999996e-32   NR CAF0842336.1 249248 g519270 i0 75.7 2.97309417040359 74 18 99.6 0 222 1 284 357 CAF0842336.1 unnamed protein product [Adineta ricciae] diamond 663 124 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
27693335 27693335 PRJNA550047_P_NODE_600604_length_198_cov_4.384000_g598631_i0 PRJNA550047 600604 198 4.384 8.68032 Eurotatoria 2816136 Rotifera other_Eukaryota 119 5.36e-30   NR CAF1022903.1 392033 g598631 i0 87.3 5.72727272727273 63 8 95.5 0 10 198 368 430 CAF1022903.1 unnamed protein product [Rotaria sordida] diamond 1134 119 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sordida
28814615 28814615 PRJNA550047_P_NODE_215768_length_301_cov_16.842105_g213799_i0 PRJNA550047 215768 301 16.842105 50.69473605 Rotaria magnacalcarata 392030 Rotifera other_Eukaryota 43.9 0.0289   NR CAF4576008.1 392030 g213799 i0 59.4 0.956810631229236 32 12 31.9 1 301 206 189 219 CAF4576008.1 unnamed protein product, partial [Rotaria magnacalcarata] diamond 288 43.9 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata
29067750 29067750 PRJNA550047_P_NODE_486328_length_235_cov_5.962963_g484355_i0 PRJNA550047 486328 235 5.962963 14.01296305 Adineta steineri 433720 Rotifera other_Eukaryota 41.6 0.0257   NR CAF0868378.1 433720 g484355 i0 63.3 0.765957446808511 30 11 38.3 0 47 136 4 33 CAF0868378.1 unnamed protein product, partial [Adineta steineri] diamond 180 41.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta steineri
29762066 29762066 PRJNA550047_P_NODE_413251_length_260_cov_4.294118_g411279_i0 PRJNA550047 413251 260 4.294118 11.1647068 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 51.6 2.43e-6   NR CAF3900116.1 2762511 g411279 i0 42.2 3.02307692307692 64 36 72.7 1 206 18 10 73 CAF3900116.1 unnamed protein product, partial [Rotaria sp. Silwood1] diamond 786 51.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1
30172669 30172669 PRJNA550047_P_NODE_138212_length_345_cov_5.485294_g136252_i0 PRJNA550047 138212 345 5.485294 18.9242643 Adineta steineri 433720 Rotifera other_Eukaryota 48.9 6.13e-5   NR CAF4341319.1 433720 g136252 i0 92 0.217391304347826 25 2 21.7 0 149 75 52 76 CAF4341319.1 unnamed protein product, partial [Adineta steineri] diamond 75 48.9 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta steineri
31468827 31468827 PRJNA550047_P_NODE_579696_length_204_cov_8.465649_g577723_i0 PRJNA550047 579696 204 8.465649 17.26992396 Rotaria magnacalcarata 392030 Rotifera other_Eukaryota 59.7 5.7e-9   NR CAF2165557.1 392030 g577723 i0 65 0.588235294117647 40 14 58.8 0 2 121 46 85 CAF2165557.1 unnamed protein product [Rotaria magnacalcarata] diamond 120 59.7 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata
32006319 32006319 PRJNA550047_P_NODE_27258_length_437_cov_6.969780_g25337_i0 PRJNA550047 27258 437 6.96978 30.4579386 Rotaria socialis 392032 Rotifera other_Eukaryota 63.5 1.56e-8   NR CAF3609291.1 392032 g25337 i0 65.4 0.356979405034325 52 17 35 1 3 155 265 316 CAF3609291.1 unnamed protein product [Rotaria socialis] diamond 156 63.5 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria socialis
32795980 32795980 PRJNA550047_P_NODE_433640_length_252_cov_11.972067_g431668_i0 PRJNA550047 433640 252 11.972067 30.16960884 Rotaria sp. Silwood2 2762512 Rotifera other_Eukaryota 91.7 5.36e-20   NR CAF3447321.1 2762512 g431668 i0 56.6 1.97619047619048 83 35 98.8 1 2 250 8 89 CAF3447321.1 unnamed protein product [Rotaria sp. Silwood2] diamond 498 91.7 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood2
32796004 32796004 PRJNA550047_P_NODE_48980_length_345_cov_26.838235_g47020_i0 PRJNA550047 48980 345 26.838235 92.59191075 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 45.1 0.0188   NR CAF4914033.1 2762511 g47020 i0 42.9 1.16521739130435 49 28 42.6 0 196 342 346 394 CAF4914033.1 unnamed protein product [Rotaria sp. Silwood1] diamond 402 45.1 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;