RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA550047" and tax_clade = "sulfur-oxidizing symbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA550047 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13268606 13268606 PRJNA550047_P_NODE_298971_length_297_cov_10.071429_g297002_i0 PRJNA550047 298971 297 10.071429 29.91214413 Catillopecten margaritatus gill symbiont 3083288 Bacteria Bacteria 62.1 4.58e-5   NTclustered gi|2707517441|gb|CP138327.1| 3083288 g297002 i0 97.222 0.121212121212121 36 1 12 0 33 68 233882 233847 MAG: Catillopecten margaritatus gill symbiont isolate Gill1 chromosome, complete genome blastn 36 62.1 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Catillopecten margaritatus gill symbiont
15816578 15816578 PRJNA550047_P_NODE_218733_length_301_cov_13.070175_g216764_i0 PRJNA550047 218733 301 13.070175 39.34122675 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 Bacteria Bacteria 63.9 1.29e-5   NTclustered gi|937342454|dbj|AP013042.1| 1303921 g216764 i0 83.824 0.458471760797342 68 9 22 2 235 301 638220 638286 Endosymbiont of Bathymodiolus septemdierum str. Myojin knoll DNA, complete genome blastn 138 63.9 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Bathymodiolus septemdierum thioautotrophic gill symbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;