RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA550047", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 3 ✖

bioproject 1

  • PRJNA550047 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3069329 3069329 PRJNA550047_P_NODE_62263_length_345_cov_14.227941_g60303_i0 PRJNA550047 62263 345 14.227941 49.08639645 Candidatus Stammera capleta 2608262 Bacteria Bacteria 119 3.17e-22   NTclustered gi|2676815317|gb|CP144796.1| 2608262 g60303 i0 80.795 21.1072463768116 151 29 44 0 1 151 257217 257067 MAG: Candidatus Stammera capleta isolate IDODFKOK chromosome blastn 7282 119 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
14546924 14546924 PRJNA550047_P_NODE_562812_length_209_cov_13.257353_g560839_i0 PRJNA550047 562812 209 13.257353 27.70786777 Candidatus Stammera capleta 2608262 Bacteria Bacteria 226 1.0199999999999997e-54   NTclustered gi|2676815344|gb|CP144815.1| 2608262 g560839 i0 86.256 83.200956937799 211 25 100 4 1 209 67192 67400 MAG: Candidatus Stammera capleta isolate KGPCFMKM chromosome blastn 17389 226 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
29966471 29966471 PRJNA550047_P_NODE_229331_length_301_cov_6.578947_g227362_i0 PRJNA550047 229331 301 6.578947 19.80263047 Enterobacteriaceae 543 Bacteria Bacteria 106 3.59e-24   NR WP_415673928.1 2952789 g227362 i0 41.9 12.7076411960133 160 30 96.7 1 293 3 296 455 WP_415673928.1 DNA polymerase III subunit alpha [Symbiopectobacterium sp.] diamond 3825 107 0.990654205607477 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Symbiopectobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;