RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA550047", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

analysis 2

tax_superkingdom 1

  • Eukaryota · 7 ✖

tax_clade 1

  • Metamonada · 7 ✖

bioproject 1

  • PRJNA550047 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5622094 5622094 PRJNA550047_P_NODE_592265_length_200_cov_11.196850_g590292_i0 PRJNA550047 592265 200 11.19685 22.3937 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 359 9.14e-95   NTclustered gi|62466089|gb|AY886846.1| 5726 g590292 i0 99 99.765 200 2 100 0 1 200 1045 1244 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 19953 359 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
13875519 13875519 PRJNA550047_P_NODE_44731_length_357_cov_1.866197_g42775_i0 PRJNA550047 44731 357 1.866197 6.66232329 Tritrichomonas 5723 Parabasalia other_Eukaryota 636 7.339999999999998e-178   NTclustered gi|62466089|gb|AY886846.1| 5726 g42775 i0 99.429 98.8795518207283 350 2 98 0 8 357 1 350 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 35300 636 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
14546095 14546095 PRJNA550047_P_NODE_495372_length_232_cov_5.402516_g493399_i0 PRJNA550047 495372 232 5.402516 12.53383712 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 283 6.76e-72   NTclustered gi|2274983416|gb|OP038912.1| 5725 g493399 i0 93.264 43.9353448275862 193 11 82 2 42 232 162 354 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 10193 283 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
19639464 19639464 PRJNA550047_P_NODE_175496_length_345_cov_2.959559_g173536_i0 PRJNA550047 175496 345 2.959559 10.21047855 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 204 8.519999999999999e-48   NTclustered gi|2274983416|gb|OP038912.1| 5725 g173536 i0 91.391 4.61159420289855 151 10 81 3 1 150 1187 1335 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 1591 204 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
19641776 19641776 PRJNA550047_P_NODE_362996_length_279_cov_23.834951_g361025_i0 PRJNA550047 362996 279 23.834951 66.49951329 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 82.4 3.28e-11   NTclustered gi|124000930|ref|XM_001276885.1| 412133 g361025 i0 89.394 9.49820788530466 66 5 23 2 21 85 145 209 Trichomonas vaginalis G3 GTPase protein (TVAGG3_0992610), partial mRNA blastn 2650 82.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27172732 27172732 PRJNA550047_P_NODE_461622_length_243_cov_9.200000_g459649_i0 PRJNA550047 461622 243 9.2 22.356 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 79.7 3.53e-15   NR KAJ3427699.1 1746091 g459649 i0 45 0.987654320987654 80 44 98.8 0 241 2 458 537 KAJ3427699.1 inter-alpha-trypsin inhibitor heavy chain family member [Anaeramoeba flamelloides] diamond 240 79.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
27850779 27850779 PRJNA550047_P_NODE_521624_length_223_cov_9.053333_g519651_i0 PRJNA550047 521624 223 9.053333 20.18893259 root 1 Root_unresolved Root_unresolved 42.7 0.0164   NR CAK8802789.1 28002 g519651 i0 55.6 1.30493273542601 36 16 48.4 0 221 114 36 71 CAK8802789.1 HINF_057919 [Hexamita inflata] diamond 291 42.7 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;