RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA550047" and tax_clade = "Human papillomavirus types"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 6 ✖

bioproject 1

  • PRJNA550047 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1791540 1791540 PRJNA550047_P_NODE_395662_length_266_cov_18.497409_g393690_i0 PRJNA550047 395662 266 18.497409 49.20310794 Human papillomavirus type 222 2200959 Viruses Viruses 486 5.629999999999999e-133   NTclustered gi|1389447876|gb|MH172379.1| 2200959 g393690 i0 99.624 3.13157894736842 266 1 100 0 1 266 5841 5576 Human papillomavirus type 222 isolate CT17, complete genome blastn 833 486 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 222
5620201 5620201 PRJNA550047_P_NODE_433505_length_252_cov_13.033520_g431533_i0 PRJNA550047 433505 252 13.03352 32.8444704 Human papillomavirus type 222 2200959 Viruses Viruses 416 7.029999999999999e-112   NTclustered gi|1389447876|gb|MH172379.1| 2200959 g431533 i0 96.429 2.74206349206349 252 9 100 0 1 252 4419 4168 Human papillomavirus type 222 isolate CT17, complete genome blastn 691 416 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 222
13268049 13268049 PRJNA550047_P_NODE_25591_length_447_cov_10.422460_g23677_i0 PRJNA550047 25591 447 10.42246 46.5883962 Human papillomavirus type 222 2200959 Viruses Viruses 516 1.28e-141   NTclustered gi|1389447876|gb|MH172379.1| 2200959 g23677 i0 99.645 1.95525727069351 282 1 98 0 166 447 4794 5075 Human papillomavirus type 222 isolate CT17, complete genome blastn 874 516 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 222
13875614 13875614 PRJNA550047_P_NODE_46811_length_349_cov_15.373188_g44852_i0 PRJNA550047 46811 349 15.373188 53.65242612 Viruses 10239 Viruses Viruses 606 5.61e-169   NTclustered gi|1559669707|gb|MH777252.2| 10566 g44852 i0 98 6.61604584527221 350 5 100 2 1 349 1500 1848 MAG: Human papillomavirus isolate HPV-mSK_110, complete genome blastn 2309 612 0.990196078431373 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
17698835 17698835 PRJNA550047_P_NODE_293514_length_298_cov_4.226667_g291545_i0 PRJNA550047 293514 298 4.226667 12.59546766 Gammapapillomavirus 325455 Viruses Viruses 534 2.26e-147   NTclustered gi|1480688964|gb|MH777338.1| 10566 g291545 i0 98.993 2.53355704697987 298 3 100 0 1 298 170 467 MAG: Human papillomavirus isolate HPV-mSK_196, complete genome blastn 755 534 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
20915124 20915124 PRJNA550047_P_NODE_15697_length_522_cov_9.280624_g13822_i0 PRJNA550047 15697 522 9.280624 48.44485728 Human papillomavirus 10566 Viruses Viruses 311 7.65e-80   NTclustered gi|1559669707|gb|MH777252.2| 10566 g13822 i0 100 5.65134099616858 168 0 90 0 178 345 2993 3160 MAG: Human papillomavirus isolate HPV-mSK_110, complete genome blastn 2950 311 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;