RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA550047", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA550047 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24739052 24739052 PRJNA550047_P_NODE_154040_length_345_cov_4.463235_g152080_i0 PRJNA550047 154040 345 4.463235 15.39816075 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 78.6 1.14e-14   NR MBN2311201.1 2030809 g152080 i0 76.6 3.2695652173913 47 11 40.9 0 203 343 123 169 MBN2311201.1 carbohydrate ABC transporter permease [Candidatus Hydrogenedentota bacterium] diamond 1128 78.6 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
27092758 27092758 PRJNA550047_P_NODE_310342_length_296_cov_4.345291_g308373_i0 PRJNA550047 310342 296 4.345291 12.86206136 Bacteria 2 Bacteria Bacteria 94.4 5.3e-20   NR NUM54633.1 2030809 g308373 i0 28.6 7.42905405405405 245 28 99.3 1 3 296 817 1061 NUM54633.1 pyruvate carboxylase [Candidatus Hydrogenedentota bacterium] diamond 2199 95.1 0.992639327024185 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
29713394 29713394 PRJNA550047_P_NODE_562350_length_209_cov_17.022059_g560377_i0 PRJNA550047 562350 209 17.022059 35.57610331 Bacteria 2 Bacteria Bacteria 47.8 3.91e-4   NR MFM1918579.1 2030809 g560377 i0 71.4 4.09090909090909 28 8 40.2 0 2 85 295 322 MFM1918579.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 855 47.8 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30236144 30236144 PRJNA550047_P_NODE_596052_length_199_cov_8.944444_g594079_i0 PRJNA550047 596052 199 8.944444 17.79944356 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 42 0.0387   NR HOV73658.1 2030809 g594079 i0 42.9 0.738693467336683 49 26 73.9 1 153 7 203 249 HOV73658.1 phage tail protein [Candidatus Hydrogenedentota bacterium] diamond 147 42 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31026150 31026150 PRJNA550047_P_NODE_595195_length_199_cov_13.436508_g593222_i0 PRJNA550047 595195 199 13.436508 26.73865092 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 80.5 1.46e-16   NR HPO15644.1 2030809 g593222 i0 53 0.994974874371859 66 31 99.5 0 2 199 88 153 HPO15644.1 ribulose-phosphate 3-epimerase [Candidatus Hydrogenedentota bacterium] diamond 198 80.5 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;