RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA549880", tax_phylum = "Deinococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Deinococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA549880 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1787311 1787311 PRJNA549880_P_NODE_14582_length_243_cov_0.905882_g14489_i0 PRJNA549880 14582 243 0.905882 2.20129326 Deinococcus sp. VB142 3112952 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g14489 i0 100 17.0617283950617 243 0 100 0 1 243 1920214 1919972 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 4146 449 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
4947813 4947813 PRJNA549880_P_NODE_9044_length_270_cov_1.294416_g8951_i0 PRJNA549880 9044 270 1.294416 3.4949232 Deinococcus 1298 Bacteria Bacteria 416 7.619999999999998e-112   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g8951 i0 94.465 187.392592592593 271 14 100 1 1 270 72974 73244 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 50596 416 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
15147820 15147820 PRJNA549880_P_NODE_9212_length_267_cov_3.768041_g9119_i0 PRJNA549880 9212 267 3.768041 10.06066947 Deinococcus 1298 Bacteria Bacteria 424 4.49e-114   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g9119 i0 97.571 216.322097378277 247 6 93 0 14 260 423776 424022 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 57758 424 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
15814835 15814835 PRJNA549880_P_NODE_9333_length_266_cov_1.176166_g9240_i0 PRJNA549880 9333 266 1.176166 3.12860156 Deinococcus aetherius 200252 Bacteria Bacteria 396 9.759999999999997e-106   NTclustered gi|2281894955|dbj|AP026560.1| 200252 g9240 i0 93.609 260.812030075188 266 15 100 2 1 266 822689 822952 Deinococcus aetherius ST0316 DNA, complete genome blastn 69376 396 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius
20914053 20914053 PRJNA549880_P_NODE_7797_length_287_cov_1.341121_g7704_i0 PRJNA549880 7797 287 1.341121 3.84901727 Deinococcus sp. VB343 3385567 Bacteria Bacteria 520 6.049999999999999e-143   NTclustered gi|2905211496|gb|CP179945.1| 3385567 g7704 i0 99.303 3.98954703832753 287 2 100 0 1 287 29068 29354 Deinococcus sp. VB343 chromosome 1, complete sequence blastn 1145 520 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB343
25345991 25345991 PRJNA549880_P_NODE_2300_length_475_cov_1.323383_g2207_i0 PRJNA549880 2300 475 1.323383 6.28606925 Deinococcus 1298 Bacteria Bacteria 592 2.2e-164   NTclustered gi|2264081587|gb|CP094462.1| 1299 g2207 i0 89.308 204.206315789474 477 44 100 7 1 475 881442 880971 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 96998 592 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
31405308 31405308 PRJNA549880_P_NODE_9656_length_261_cov_1.335106_g9563_i0 PRJNA549880 9656 261 1.335106 3.48462666 Deinococcus antarcticus 1298767 Bacteria Bacteria 171 1.66e-53   NR WP_380076431.1 1298767 g9563 i0 96.6 1 87 3 100 0 1 261 1 87 WP_380076431.1 YlxR family protein [Deinococcus antarcticus] diamond 261 171 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;