RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA549880", tax_kingdom = "Pseudomonadati" and tax_phylum = "Elusimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Elusimicrobiota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA549880 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9440400 9440400 PRJNA549880_P_NODE_9048_length_270_cov_1.228426_g8955_i0 PRJNA549880 9048 270 1.228426 3.3167502 Elusimicrobium minutum 423605 Bacteria Bacteria 52.8 0.025   NTclustered gi|186970583|gb|CP001055.1| 445932 g8955 i0 100 0.103703703703704 28 0 10 0 27 54 364388 364361 Elusimicrobium minutum Pei191, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Elusimicrobiota Elusimicrobia Elusimicrobiales Elusimicrobiaceae Elusimicrobium Elusimicrobium minutum
30962688 30962688 PRJNA549880_P_NODE_3534_length_394_cov_0.959502_g3441_i0 PRJNA549880 3534 394 0.959502 3.78043788 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 63.9 5.98e-9   NR MDR2860866.1 2030800 g3441 i0 54.7 0.487309644670051 64 28 48.7 1 1 192 203 265 MDR2860866.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha [Elusimicrobiota bacterium] diamond 192 63.9 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;