RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA549880", tax_kingdom = "Metazoa" and tax_phylum = "Phoronida"

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tax_superkingdom 1

tax_phylum 1

  • Phoronida · 1 ✖

tax_kingdom 1

  • Metazoa · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA549880 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18363486 18363486 PRJNA549880_P_NODE_4035_length_373_cov_2.906667_g3942_i0 PRJNA549880 4035 373 2.906667 10.84186791 Phoronis muelleri 478209 Phoronida other_Eukaryota 289 2.48e-73   NTclustered gi|188572483|gb|EU558345.1| 478209 g3942 i0 84.175 45.1528150134048 297 47 80 0 77 373 46 342 Phoronis muelleri putative 40S ribosomal protein RPS20 mRNA, complete cds blastn 16842 289 1 Eukaryota Opisthokonta Metazoa Phoronida     Phoronidae Phoronis Phoronis muelleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;