RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA549880", tax_kingdom = "Metazoa" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA549880 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1787284 1787284 PRJNA549880_P_NODE_13242_length_246_cov_0.890173_g13149_i0 PRJNA549880 13242 246 0.890173 2.18982558 Potamilus streckersoni 2493646 Mollusca Mollusca 116 8.499999999999999e-31   NR KAK3599219.1 2493646 g13149 i0 75 0.926829268292683 76 19 92.7 0 236 9 111 186 KAK3599219.1 hypothetical protein CHS0354_012828 [Potamilus streckersoni] diamond 228 116 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Unionida Unionidae Potamilus Potamilus streckersoni
29745046 29745046 PRJNA549880_P_NODE_3970_length_376_cov_5.207921_g3877_i0 PRJNA549880 3970 376 5.207921 19.58178296 Opisthokonta 33154 Mollusca Mollusca 66.6 4.53e-11   NR XP_064613747.1 13599 g3877 i0 48.8 5.03457446808511 84 35 60.6 3 366 139 5 88 XP_064613747.1 large ribosomal subunit protein eL27-like [Liolophura japonica] diamond 1893 66.6 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Liolophura Liolophura japonica
30488689 30488689 PRJNA549880_P_NODE_14813_length_243_cov_0.876471_g14720_i0 PRJNA549880 14813 243 0.876471 2.12982453 Ruditapes philippinarum 129788 Mollusca Mollusca 60.1 3.05e-8   NR XP_060567925.1 129788 g14720 i0 47.8 2.67901234567901 67 31 82.7 3 240 40 1522 1584 XP_060567925.1 uncharacterized protein LOC132726603 [Ruditapes philippinarum] diamond 651 60.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Ruditapes Ruditapes philippinarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;