RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA549880", tax_kingdom = "Metazoa" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA549880 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1787394 1787394 PRJNA549880_P_NODE_4082_length_371_cov_2.365772_g3989_i0 PRJNA549880 4082 371 2.365772 8.77701412 Metazoa 33208 Brachiopoda other_Eukaryota 168 2.17e-51   NR XP_013421033.1 7574 g3989 i0 68.4 9.49326145552561 117 37 94.6 0 361 11 1 117 XP_013421033.1 60S ribosomal protein L31 [Lingula anatina] diamond 3522 168 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
12598648 12598648 PRJNA549880_P_NODE_3550_length_393_cov_1.496875_g3457_i0 PRJNA549880 3550 393 1.496875 5.88271875 Lingula anatina 7574 Brachiopoda other_Eukaryota 148 4.6899999999999996e-43   NR XP_013381511.1 7574 g3457 i0 63.2 2.86259541984733 125 46 95.4 0 377 3 1 125 XP_013381511.1 ubiquitin-like protein FUBI [Lingula anatina] diamond 1125 148 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;