RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA549880" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA549880 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1787334 1787334 PRJNA549880_P_NODE_15322_length_242_cov_0.881657_g15229_i0 PRJNA549880 15322 242 0.881657 2.13360994 Leptotrichia hofstadii 157688 Bacteria Bacteria 329 8.99e-86   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g15229 i0 91.322 8.40495867768595 242 20 100 1 1 242 2173006 2173246 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 2034 329 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
27014583 27014583 PRJNA549880_P_NODE_942_length_719_cov_1.896285_g860_i0 PRJNA549880 942 719 1.896285 13.63428915 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 178 1.1099999999999998e-47   NR WP_294095705.1 527638 g860 i0 68.2 1.07649513212796 129 38 53.8 1 393 7 450 575 WP_294095705.1 glycosyl hydrolase family 18 protein [uncultured Cetobacterium sp.] diamond 774 178 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
28166711 28166711 PRJNA549880_P_NODE_3685_length_387_cov_1.417197_g3592_i0 PRJNA549880 3685 387 1.417197 5.48455239 Cetobacterium 180162 Bacteria Bacteria 118 7.01e-28   NR WP_240220714.1 188913 g3592 i0 72.9 2.24031007751938 70 19 54.3 0 23 232 687 756 WP_240220714.1 glycosyl hydrolase family 18 protein [Cetobacterium somerae] diamond 867 118 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
28261148 28261148 PRJNA549880_P_NODE_5186_length_339_cov_1.131579_g5093_i0 PRJNA549880 5186 339 1.131579 3.83605281 Cetobacterium 180162 Bacteria Bacteria 141 2.07e-36   NR WP_294095705.1 527638 g5093 i0 67 1.92035398230089 109 35 96.5 1 330 4 506 613 WP_294095705.1 glycosyl hydrolase family 18 protein [uncultured Cetobacterium sp.] diamond 651 141 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
29067550 29067550 PRJNA549880_P_NODE_1568_length_566_cov_1.864097_g1477_i0 PRJNA549880 1568 566 1.864097 10.55078902 Propionigenium maris 45622 Bacteria Bacteria 96.7 1.9e-19   NR WP_281833196.1 45622 g1477 i0 58.5 0.434628975265018 82 27 41.9 2 241 5 519 596 WP_281833196.1 glycosyl hydrolase family 18 protein [Propionigenium maris] diamond 246 96.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Propionigenium Propionigenium maris
30551716 30551716 PRJNA549880_P_NODE_1093_length_668_cov_0.984874_g1005_i0 PRJNA549880 1093 668 0.984874 6.57895832 Candidatus Cetobacterium colombiensis 3073100 Bacteria Bacteria 194 9.859999999999999e-54   NR WP_320312577.1 3073100 g1005 i0 45.5 3.96107784431138 220 112 98.4 4 10 666 451 663 WP_320312577.1 glycosyl hydrolase family 18 protein [Candidatus Cetobacterium colombiensis] diamond 2646 194 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Candidatus Cetobacterium colombiensis
31974506 31974506 PRJNA549880_P_NODE_13498_length_245_cov_0.895349_g13405_i0 PRJNA549880 13498 245 0.895349 2.19360505 Propionigenium maris 45622 Bacteria Bacteria 45.1 0.00596   NR WP_281836990.1 45622 g13405 i0 56.7 0.36734693877551 30 13 36.7 0 3 92 1122 1151 WP_281836990.1 glycosyl hydrolase family 18 protein [Propionigenium maris] diamond 90 45.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Propionigenium Propionigenium maris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;