RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA549880", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA549880 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3062868 3062868 PRJNA549880_P_NODE_5203_length_338_cov_1.992453_g5110_i0 PRJNA549880 5203 338 1.992453 6.73449114 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 117 1.1200000000000002e-21   NTclustered gi|2874254132|emb|OY970217.1| 1672391 g5110 i0 89.247 18.0443786982249 93 10 28 0 99 191 3521087 3520995 MAG: uncultured Chloroflexia bacterium isolate MFD05684.bin.1.130 genome assembly, chromosome: 1 blastn 6099 117 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
29082342 29082342 PRJNA549880_P_NODE_14048_length_244_cov_0.900585_g13955_i0 PRJNA549880 14048 244 0.900585 2.1974274 PVC group 1783257 Bacteria Bacteria 86.7 1.28e-17   NR MCH8223489.1 2026724 g13955 i0 61.5 2.84016393442623 78 25 94.7 2 242 12 107 180 MCH8223489.1 fibronectin type III domain-containing protein [Chloroflexota bacterium] diamond 693 86.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;