RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA549880" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA549880 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1787282 1787282 PRJNA549880_P_NODE_13222_length_246_cov_0.890173_g13129_i0 PRJNA549880 13222 246 0.890173 2.18982558 Trentepohlia odorata 2576626 Plants Plants 449 6.74e-122   NTclustered gi|1707505678|ref|NC_043776.1| 2576626 g13129 i0 99.593 2.34959349593496 246 1 100 0 1 246 182360 182115 Trentepohlia odorata chloroplast, complete genome blastn 578 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia odorata
5615668 5615668 PRJNA549880_P_NODE_14585_length_243_cov_0.905882_g14492_i0 PRJNA549880 14585 243 0.905882 2.20129326 Trentepohlia odorata 2576626 Plants Plants 449 6.65e-122   NTclustered gi|1707505678|ref|NC_043776.1| 2576626 g14492 i0 100 34.8765432098765 243 0 100 0 1 243 183895 183653 Trentepohlia odorata chloroplast, complete genome blastn 8475 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia odorata
8164647 8164647 PRJNA549880_P_NODE_12587_length_247_cov_0.885057_g12494_i0 PRJNA549880 12587 247 0.885057 2.18609079 Trentepohlia odorata 2576626 Plants Plants 457 4.05e-124   NTclustered gi|1707505678|ref|NC_043776.1| 2576626 g12494 i0 100 1 247 0 100 0 1 247 276469 276715 Trentepohlia odorata chloroplast, complete genome blastn 247 457 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia odorata
30362710 30362710 PRJNA549880_P_NODE_7892_length_286_cov_1.089202_g7799_i0 PRJNA549880 7892 286 1.089202 3.11511772 Picochlorum sp. BPE23 2696299 Plants Plants 50.1 1.63e-4   NR KAI8110200.1 2696299 g7799 i0 53.1 0.671328671328671 32 15 33.6 0 286 191 470 501 KAI8110200.1 hypothetical protein M9435_001879 [Picochlorum sp. BPE23] diamond 192 50.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
31515141 31515141 PRJNA549880_P_NODE_11996_length_248_cov_0.880000_g11903_i0 PRJNA549880 11996 248 0.88 2.1824 Picochlorum 249344 Plants Plants 99 6.52e-22   NR WPT16210.1 1470871 g11903 i0 90 12.0967741935484 50 5 60.5 0 209 60 396 445 WPT16210.1 ATP-dependent zinc metalloprotease FTSH 5 [Picochlorum sp. SENEW3] diamond 3000 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. SENEW3
31546679 31546679 PRJNA549880_P_NODE_11516_length_249_cov_0.875000_g11423_i0 PRJNA549880 11516 249 0.875 2.17875 Selenastraceae 35466 Plants Plants 59.7 1.79e-8   NR XP_013900910.1 145388 g11423 i0 45.2 5.48192771084337 62 34 74.7 0 186 1 64 125 XP_013900910.1 3-ketoacyl-CoA synthase 4 [Monoraphidium neglectum] diamond 1365 60.1 0.993344425956739 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;