RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA549880", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA549880 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8164734 8164734 PRJNA549880_P_NODE_2167_length_488_cov_1.566265_g2074_i0 PRJNA549880 2167 488 1.566265 7.6433732 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 265 5.619999999999999e-66   NTclustered gi|2795059860|ref|XM_067943008.1| 4785 g2074 i0 77.803 14.9815573770492 446 87 90 12 1 440 235 674 Phytophthora cinnamomi 40S ribosomal protein S3a (IUM83_18029), partial mRNA blastn 7311 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
28499249 28499249 PRJNA549880_P_NODE_4227_length_365_cov_5.544521_g4134_i0 PRJNA549880 4227 365 5.544521 20.23750165 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 103 1.78e-25   NR KAF0714148.1 120398 g4134 i0 57.3 4.29041095890411 89 35 70.7 1 108 365 42 130 KAF0714148.1 hypothetical protein As57867_004008 [Aphanomyces stellatus] diamond 1566 103 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;