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contig_metadata

22 rows where bioproject = "PRJNA549880" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 22 ✖

bioproject 1

  • PRJNA549880 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1787269 1787269 PRJNA549880_P_NODE_12722_length_247_cov_0.885057_g12629_i0 PRJNA549880 12722 247 0.885057 2.18609079 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 243 1.23e-59   NTclustered gi|1938775668|gb|CP054178.1| 2026777 g12629 i0 87.383 191.506072874494 214 23 85 4 1 211 194138 194350 MAG: Phycisphaeraceae bacterium isolate H1_PLA4 chromosome, complete genome blastn 47302 243 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
3062705 3062705 PRJNA549880_P_NODE_11123_length_250_cov_0.870056_g11030_i0 PRJNA549880 11123 250 0.870056 2.17514 Chthoniobacter 295577 Bacteria Bacteria 131 6.72e-34   NR WP_131989125.1 191863 g11030 i0 84.3 3.984 83 13 99.6 0 249 1 402 484 WP_131989125.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [Chthoniobacter flavus] diamond 996 131 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
18363358 18363358 PRJNA549880_P_NODE_11335_length_249_cov_1.312500_g11242_i0 PRJNA549880 11335 249 1.3125 3.268125 Prosthecobacter sp. 1965333 Bacteria Bacteria 96.7 2.37e-22   NR HEY1083879.1 1965333 g11242 i0 95.8 0.578313253012048 48 2 57.8 0 105 248 1 48 HEY1083879.1 hypothetical protein [Prosthecobacter sp.] diamond 144 96.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
22188843 22188843 PRJNA549880_P_NODE_8278_length_281_cov_1.177885_g8185_i0 PRJNA549880 8278 281 1.177885 3.30985685 Chthoniobacter sp. 2510640 Bacteria Bacteria 127 4.9000000000000005e-34   NR MEA3210088.1 2510640 g8185 i0 84.3 2.24199288256228 70 11 74.7 0 280 71 186 255 MEA3210088.1 methionyl aminopeptidase [Chthoniobacter sp.] diamond 630 127 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
26997648 26997648 PRJNA549880_P_NODE_13002_length_246_cov_0.890173_g12909_i0 PRJNA549880 13002 246 0.890173 2.18982558 PVC group 1783257 Bacteria Bacteria 139 2.9e-40   NR HEV7869214.1 2811408 g12909 i0 84.1 2 82 13 100 0 246 1 33 114 HEV7869214.1 VTT domain-containing protein [Chthoniobacteraceae bacterium] diamond 492 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
27204151 27204151 PRJNA549880_P_NODE_8482_length_278_cov_1.487805_g8389_i0 PRJNA549880 8482 278 1.487805 4.1360979 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 174 3.61e-49   NR MDB6120269.1 2026800 g8389 i0 94.6 0.992805755395683 92 5 99.3 0 1 276 423 514 MDB6120269.1 sul1 [Verrucomicrobiaceae bacterium] diamond 276 174 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27330916 27330916 PRJNA549880_P_NODE_9523_length_263_cov_1.215789_g9430_i0 PRJNA549880 9523 263 1.215789 3.19752507 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 91.3 4.08e-19   NR MBN1527352.1 2035772 g9430 i0 45.3 2.85171102661597 86 47 98.1 0 258 1 630 715 MBN1527352.1 valine--tRNA ligase [Candidatus Omnitrophota bacterium] diamond 750 91.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27520278 27520278 PRJNA549880_P_NODE_12863_length_246_cov_1.450867_g12770_i0 PRJNA549880 12863 246 1.450867 3.56913282 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 65.9 8.83e-12   NR RYD66739.1 2026800 g12770 i0 54.4 0.695121951219512 57 26 69.5 0 174 4 1 57 RYD66739.1 MAG: hypothetical protein EOP83_04320 [Verrucomicrobiaceae bacterium] diamond 171 65.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28277909 28277909 PRJNA549880_P_NODE_8386_length_279_cov_2.233010_g8293_i0 PRJNA549880 8386 279 2.23301 6.2300979 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 130 1.1499999999999999e-32   NR RYD66867.1 2026800 g8293 i0 64.5 1 93 33 100 0 279 1 515 607 RYD66867.1 MAG: hypothetical protein EOP83_04055, partial [Verrucomicrobiaceae bacterium] diamond 279 130 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28846234 28846234 PRJNA549880_P_NODE_8788_length_274_cov_1.179104_g8695_i0 PRJNA549880 8788 274 1.179104 3.23074496 Prosthecobacter sp. 1965333 Bacteria Bacteria 189 2.3699999999999997e-56   NR HEY1083325.1 1965333 g8695 i0 98.9 0.996350364963504 91 1 99.6 0 2 274 92 182 HEY1083325.1 condensation domain-containing protein [Prosthecobacter sp.] diamond 273 189 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
29492705 29492705 PRJNA549880_P_NODE_15250_length_242_cov_0.911243_g15157_i0 PRJNA549880 15250 242 0.911243 2.20520806 Chthoniobacter 295577 Bacteria Bacteria 90.9 1.91e-19   NR WP_006977527.1 191863 g15157 i0 95.3 1.59917355371901 43 2 53.3 0 114 242 98 140 WP_006977527.1 aminopeptidase [Chthoniobacter flavus] diamond 387 90.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
29572459 29572459 PRJNA549880_P_NODE_14290_length_244_cov_0.894737_g14197_i0 PRJNA549880 14290 244 0.894737 2.18315828 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 40.8 0.0389   NR RYD66026.1 2026800 g14197 i0 58.6 0.35655737704918 29 11 35.7 1 146 232 38 65 RYD66026.1 MAG: hypothetical protein EOP83_06015 [Verrucomicrobiaceae bacterium] diamond 87 40.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30235897 30235897 PRJNA549880_P_NODE_15212_length_242_cov_0.911243_g15119_i0 PRJNA549880 15212 242 0.911243 2.20520806 Candidatus Brocadiales bacterium 2760054 Bacteria Bacteria 42 0.0368   NR MEE9200699.1 2760054 g15119 i0 65 0.247933884297521 20 7 24.8 0 175 116 30 49 MEE9200699.1 cytochrome C [Candidatus Brocadiales bacterium] diamond 60 42 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales     Candidatus Brocadiales bacterium
30299518 30299518 PRJNA549880_P_NODE_15272_length_242_cov_0.911243_g15179_i0 PRJNA549880 15272 242 0.911243 2.20520806 Anatilimnocola aggregata 2528021 Bacteria Bacteria 137 3.0599999999999995e-37   NR WP_202921142.1 2528021 g15179 i0 88.6 0.979338842975207 79 9 97.9 0 1 237 184 262 WP_202921142.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Anatilimnocola aggregata] diamond 237 137 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Anatilimnocola Anatilimnocola aggregata
31278508 31278508 PRJNA549880_P_NODE_11195_length_250_cov_0.870056_g11102_i0 PRJNA549880 11195 250 0.870056 2.17514 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 124 4.02e-31   NR RYD67054.1 2026800 g11102 i0 72 0.984 82 23 98.4 0 4 249 87 168 RYD67054.1 MAG: PAS domain S-box protein [Verrucomicrobiaceae bacterium] diamond 246 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31689723 31689723 PRJNA549880_P_NODE_9637_length_261_cov_1.638298_g9544_i0 PRJNA549880 9637 261 1.638298 4.27595778 Phycisphaerales bacterium 2052180 Bacteria Bacteria 49.7 1.6e-4   NR MBT3202658.1 2052180 g9544 i0 62.1 0.333333333333333 29 11 33.3 0 155 69 439 467 MBT3202658.1 DUF1593 domain-containing protein [Phycisphaerales bacterium] diamond 87 49.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
31847883 31847883 PRJNA549880_P_NODE_12457_length_247_cov_0.885057_g12364_i0 PRJNA549880 12457 247 0.885057 2.18609079 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 55.5 1.22e-6   NR MEQ1859438.1 2811408 g12364 i0 57.8 1.03238866396761 45 19 54.7 0 137 3 1 45 MEQ1859438.1 dicarboxylate/amino acid:cation symporter [Chthoniobacteraceae bacterium] diamond 255 55.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
31911243 31911243 PRJNA549880_P_NODE_13597_length_245_cov_0.895349_g13504_i0 PRJNA549880 13597 245 0.895349 2.19360505 Chthoniobacter sp. 2510640 Bacteria Bacteria 58.2 1.05e-8   NR MEI9897641.1 2510640 g13504 i0 61.9 0.514285714285714 42 16 51.4 0 47 172 66 107 MEI9897641.1 hypothetical protein [Chthoniobacter sp.] diamond 126 58.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
32037850 32037850 PRJNA549880_P_NODE_7198_length_297_cov_1.321429_g7105_i0 PRJNA549880 7198 297 1.321429 3.92464413 Chthoniobacter sp. 2510640 Bacteria Bacteria 57.8 2.03e-7   NR MEI9893325.1 2510640 g7105 i0 65 0.818181818181818 40 14 40.4 0 176 295 1 40 MEI9893325.1 CHASE3 domain-containing protein [Chthoniobacter sp.] diamond 243 57.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
32607104 32607104 PRJNA549880_P_NODE_12900_length_246_cov_0.919075_g12807_i0 PRJNA549880 12900 246 0.919075 2.2609245 Chthoniobacter sp. 2510640 Bacteria Bacteria 85.1 4.78e-17   NR MDR3402433.1 2510640 g12807 i0 52 1.74390243902439 75 36 91.5 0 237 13 49 123 MDR3402433.1 hypothetical protein [Chthoniobacter sp.] diamond 429 85.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
32621885 32621885 PRJNA549880_P_NODE_9380_length_265_cov_1.317708_g9287_i0 PRJNA549880 9380 265 1.317708 3.4919262 Chthoniobacter 295577 Bacteria Bacteria 52 2.56e-5   NR MEA3210404.1 2510640 g9287 i0 65.9 0.928301886792453 41 14 46.4 0 125 3 1 41 MEA3210404.1 hypothetical protein [Chthoniobacter sp.] diamond 246 52 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
32701483 32701483 PRJNA549880_P_NODE_14400_length_243_cov_0.905882_g14307_i0 PRJNA549880 14400 243 0.905882 2.20129326 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 120 7.26e-30   NR MEO8352811.1 2811408 g14307 i0 70 0.987654320987654 80 24 98.8 0 4 243 428 507 MEO8352811.1 helicase-related protein [Chthoniobacteraceae bacterium] diamond 240 120 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;