RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA549880", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA549880 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28892649 28892649 PRJNA549880_P_NODE_5468_length_332_cov_6.084942_g5375_i0 PRJNA549880 5468 332 6.084942 20.20200744 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 57.4 6.32e-8   NR CAD5215707.1 6326 g5375 i0 52.5 1.05722891566265 59 25 50.6 1 123 290 43 101 CAD5215707.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 351 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
31151778 31151778 PRJNA549880_P_NODE_2095_length_496_cov_5.576832_g2002_i0 PRJNA549880 2095 496 5.576832 27.66108672 Mononchoides sp. RS5441 669109 Nematoda Nematoda 54.7 1.16e-5   NR ACV20964.1 669109 g2002 i0 34.8 2.01411290322581 132 67 70.8 5 484 134 15 142 ACV20964.1 small subunit ribosomal protein 7 [Mononchoides sp. RS5441] diamond 999 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Mononchoides Mononchoides sp. RS5441
32196053 32196053 PRJNA549880_P_NODE_12878_length_246_cov_1.335260_g12785_i0 PRJNA549880 12878 246 1.33526 3.2847396 Brugia malayi 6279 Nematoda Nematoda 42.7 0.00737   NR CDP90914.1 6279 g12785 i0 65.6 0.390243902439024 32 11 39 0 119 24 10 41 CDP90914.1 Bm13240 [Brugia malayi] diamond 96 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;