RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA549880", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA549880 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5615657 5615657 PRJNA549880_P_NODE_13865_length_244_cov_1.350877_g13772_i0 PRJNA549880 13865 244 1.350877 3.29613988 Polychytrium aggregatum 110093 Fungi Fungi 209 1.23e-49   NTclustered gi|2432143050|ref|XM_053110573.1| 110093 g13772 i0 82.979 89.016393442623 235 36 95 3 12 244 548 316 Polychytrium aggregatum ribosomal family S4e (BJ171DRAFT_500618), mRNA blastn 21720 209 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
8772682 8772682 PRJNA549880_P_NODE_6707_length_306_cov_1.866953_g6614_i0 PRJNA549880 6707 306 1.866953 5.71287618 Opisthokonta 33154 Fungi Fungi 157 2.76e-42   NR KAJ3349164.1 109932 g6614 i0 74 15.4117647058824 100 26 98 0 301 2 37 136 KAJ3349164.1 hypothetical protein HDU83_000723 [Entophlyctis luteolus] diamond 4716 157 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis luteolus
19638151 19638151 PRJNA549880_P_NODE_3556_length_393_cov_1.034375_g3463_i0 PRJNA549880 3556 393 1.034375 4.06509375 Hyaloraphidium curvatum 82268 Fungi Fungi 120 2.6e-29   NR KAI9026071.1 82268 g3463 i0 58 0.763358778625954 100 37 76.3 1 3 302 340 434 KAI9026071.1 major facilitator superfamily domain-containing protein [Hyaloraphidium curvatum] diamond 300 120 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
20913982 20913982 PRJNA549880_P_NODE_4477_length_358_cov_1.277193_g4384_i0 PRJNA549880 4477 358 1.277193 4.57235094 Hyaloraphidium curvatum 82268 Fungi Fungi 156 5.8599999999999985e-43   NR KAI9026071.1 82268 g4384 i0 62.2 0.99720670391061506 119 45 99.7 0 2 358 162 280 KAI9026071.1 major facilitator superfamily domain-containing protein [Hyaloraphidium curvatum] diamond 357 156 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
22188763 22188763 PRJNA549880_P_NODE_3618_length_390_cov_5.123028_g3525_i0 PRJNA549880 3618 390 5.123028 19.9798092 Polychytrium aggregatum 110093 Fungi Fungi 211 5.81e-50   NTclustered gi|2432153160|ref|XM_053111407.1| 110093 g3525 i0 79.208 17.4641025641026 303 63 78 0 35 337 413 111 Polychytrium aggregatum protein RPL-30, isoform a (BJ171DRAFT_509631), mRNA blastn 6811 211 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
31436726 31436726 PRJNA549880_P_NODE_13676_length_245_cov_0.895349_g13583_i0 PRJNA549880 13676 245 0.895349 2.19360505 Rhizophlyctis rosea 64517 Fungi Fungi 55.1 1.44e-6   NR KAJ3051627.1 64517 g13583 i0 59.6 1.32244897959184 47 17 55.1 1 15 149 73 119 KAJ3051627.1 hypothetical protein HK097_007351 [Rhizophlyctis rosea] diamond 324 55.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;