RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA547066" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA547066 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6223151 6223151 PRJNA547066_P_NODE_2945_length_261_cov_1.845133_g2851_i0 PRJNA547066 2945 261 1.845133 4.81579713 Polypteridae 8289 Chordata Chordata 226 1.3299999999999994e-54   NTclustered gi|2327581580|ref|XM_051922993.1| 27687 g2851 i0 85.463 8.34865900383142 227 21 85 6 40 261 1078 1297 PREDICTED: Erpetoichthys calabaricus E3 SUMO-protein ligase ZBED1-like (LOC127526706), mRNA blastn 2179 226 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
17089040 17089040 PRJNA547066_P_NODE_1754_length_368_cov_2.831832_g1661_i0 PRJNA547066 1754 368 2.831832 10.42114176 Hyla sarda 327740 Chordata Chordata 60.2 2.09e-4   NTclustered gi|2512160518|ref|XM_056558461.1| 327740 g1661 i0 97.143 2.42119565217391 35 1 10 0 143 177 3978 3944 PREDICTED: Hyla sarda MAX network transcriptional repressor (MNT), transcript variant X2, mRNA blastn 891 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
19637773 19637773 PRJNA547066_P_NODE_5096_length_171_cov_0.882353_g5002_i0 PRJNA547066 5096 171 0.882353 1.50882363 Sus scrofa 9823 Chordata Chordata 108 3.01e-19   NTclustered gi|2103|emb|X16513.1| 9823 g5002 i0 82.031 5.00584795321637 128 21 92 2 32 159 811 936 Pig gender-neutral repetitive DNA blastn 856 108 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
27394171 27394171 PRJNA547066_P_NODE_3843_length_212_cov_1.406780_g3749_i0 PRJNA547066 3843 212 1.40678 2.9823736 Erpetoichthys calabaricus 27687 Chordata Chordata 100 2.1e-23   NR XP_051791274.1 27687 g3749 i0 76.1 6.02830188679245 71 16 99.1 1 210 1 132 202 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1278 100 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;