RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA546018" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA546018 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1119263 1119263 PRJNA546018_S_NODE_7821_length_633_cov_12.405594_g7515_i0 PRJNA546018 7821 633 12.405594 78.52741002 Vermamoeba 1260114 Tubulinea other_Eukaryota 1066 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g7515 i0 98.2 62.4170616113744 611 9 96 2 24 633 5177 5786 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 39510 1072 0.994402985074627 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13264966 13264966 PRJNA546018_S_NODE_41571_length_238_cov_4.225989_g41246_i0 PRJNA546018 41571 238 4.225989 10.05785382 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 429 8.45e-116   NTclustered gi|300078496|gb|GU001158.1| 5778 g41246 i0 99.16 33.4033613445378 238 2 100 0 1 238 3677 3440 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7950 429 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19637651 19637651 PRJNA546018_S_NODE_8516_length_602_cov_8.238447_g8204_i0 PRJNA546018 8516 602 8.238447 49.59545094 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 207 1.1999999999999998e-48   NTclustered gi|292559443|ref|NC_013986.1| 5778 g8204 i0 83.945 68.6395348837209 218 34 36 1 69 285 28057 27840 Hartmannella vermiformis mitochondrion, complete genome blastn 41321 207 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32827558 32827558 PRJNA546018_S_NODE_17180_length_396_cov_4.053731_g16855_i0 PRJNA546018 17180 396 4.053731 16.05277476 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 138 1.03e-39   NR YP_003540819.1 5778 g16855 i0 84 1.13636363636364 75 12 56.8 0 171 395 7 81 YP_003540819.1 ribosomal protein S19 [Vermamoeba vermiformis] diamond 450 138 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;