RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA546018" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA546018 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28056900 28056900 PRJNA546018_S_NODE_29365_length_290_cov_3.794760_g29040_i0 PRJNA546018 29365 290 3.79476 11.004804 Thermoproteota archaeon 2056631 Archaea Archaea 128 2.2999999999999998e-32   NR MEM3368523.1 2056631 g29040 i0 94.2 0.713793103448276 69 4 71.4 0 266 60 495 563 MEM3368523.1 hypothetical protein [Thermoproteota archaeon] diamond 207 128 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
28499241 28499241 PRJNA546018_S_NODE_46547_length_223_cov_3.746914_g46222_i0 PRJNA546018 46547 223 3.746914 8.35561822 Thermoproteota archaeon 2056631 Archaea Archaea 126 8.89e-32   NR MEM3368643.1 2056631 g46222 i0 95.5 0.887892376681614 66 3 88.8 0 25 222 791 856 MEM3368643.1 hypothetical protein [Thermoproteota archaeon] diamond 198 126 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30678031 30678031 PRJNA546018_S_NODE_23013_length_334_cov_2.732601_g22688_i0 PRJNA546018 23013 334 2.732601 9.12688734 Ignisphaera sp. 2268142 Archaea Archaea 61.6 1.1e-8   NR MCI4435342.1 2268142 g22688 i0 32.3 1.44610778443114 96 56 85.3 3 12 296 69 156 MCI4435342.1 hypothetical protein [Ignisphaera sp.] diamond 483 61.6 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;