RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA546018", tax_phylum = "Nucleocytoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Nucleocytoviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA546018 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
510891 510891 PRJNA546018_S_NODE_28861_length_293_cov_2.922414_g28536_i0 PRJNA546018 28861 293 2.922414 8.56267302 Orthopoxvirus monkeypox 3431483 Viruses Viruses 62.1 4.51e-5   NTclustered gi|2797671158|gb|PQ281491.1| 10244 g28536 i0 93.182 15.8293515358362 44 0 15 3 251 293 197035 197076 Monkeypox virus isolate Monkeypox virus/Human/Thailand/DDCBIDI-002/2024, partial genome blastn 4638 62.1 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Orthopoxvirus Orthopoxvirus monkeypox
5615056 5615056 PRJNA546018_S_NODE_50385_length_213_cov_2.736842_g50060_i0 PRJNA546018 50385 213 2.736842 5.82947346 Orthopoxvirus monkeypox 3431483 Viruses Viruses 54.7 0.005   NTclustered gi|2309594316|gb|OP536747.1| 10244 g50060 i0 100 13.6150234741784 29 0 14 0 20 48 119302 119274 Monkeypox virus isolate 9000365, partial genome blastn 2900 54.7 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Orthopoxvirus Orthopoxvirus monkeypox

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;