RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA546018", tax_kingdom = "Orthornavirae" and tax_phylum = "Pisuviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 9 ✖

tax_kingdom 1

  • Orthornavirae · 9 ✖

bioproject 1

  • PRJNA546018 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
511184 511184 PRJNA546018_S_NODE_48681_length_217_cov_435.961538_g48356_i0 PRJNA546018 48681 217 435.961538 946.03653746 Betacoronavirus pandemicum 3418604 Viruses Viruses 78.7 3.16e-10   NTclustered gi|2523416575|emb|OX996782.1| 2697049 g48356 i0 100 0.345622119815668 42 0 19 0 156 197 17654 17695 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 75 78.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
1786672 1786672 PRJNA546018_S_NODE_48682_length_217_cov_385.083333_g48357_i0 PRJNA546018 48682 217 385.083333 835.63083261 Betacoronavirus pandemicum 3418604 Viruses Viruses 78.7 3.16e-10   NTclustered gi|2523416575|emb|OX996782.1| 2697049 g48357 i0 100 0.345622119815668 42 0 19 0 21 62 17695 17654 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 75 78.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
3062088 3062088 PRJNA546018_S_NODE_47923_length_219_cov_114.544304_g47598_i0 PRJNA546018 47923 219 114.544304 250.85202576 Betacoronavirus pandemicum 3418604 Viruses Viruses 78.7 3.2e-10   NTclustered gi|2523416575|emb|OX996782.1| 2697049 g47598 i0 100 0.342465753424658 42 0 19 0 158 199 17654 17695 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 75 78.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5614920 5614920 PRJNA546018_S_NODE_41865_length_237_cov_61.045455_g41540_i0 PRJNA546018 41865 237 61.045455 144.67772835 Betacoronavirus pandemicum 3418604 Viruses Viruses 87.9 5.83e-13   NTclustered gi|2174999023|emb|OV377758.1| 2697049 g41540 i0 100 0.426160337552743 47 0 20 0 22 68 38 84 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 101 87.9 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
10714830 10714830 PRJNA546018_S_NODE_16029_length_412_cov_11.438746_g15704_i0 PRJNA546018 16029 412 11.438746 47.12763352 Betacoronavirus pandemicum 3418604 Viruses Viruses 87.9 1.09e-12   NTclustered gi|2174999023|emb|OV377758.1| 2697049 g15704 i0 100 0.114077669902913 47 0 11 0 345 391 84 38 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 47 87.9 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11989605 11989605 PRJNA546018_S_NODE_23450_length_330_cov_6.427509_g23125_i0 PRJNA546018 23450 330 6.427509 21.2107797 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 484 2.5799999999999996e-132   NTclustered gi|2196304039|gb|MZ679032.1| 3003959 g23125 i0 94.888 5.91212121212121 313 11 94 5 11 320 4924 5234 MAG: Picornavirales sp. isolate 377R-k141_737244 putative polyprotein gene, partial cds blastn 1951 484 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
13264681 13264681 PRJNA546018_S_NODE_27231_length_303_cov_84.607438_g26906_i0 PRJNA546018 27231 303 84.607438 256.36053714 Betacoronavirus pandemicum 3418604 Viruses Viruses 78.7 4.66e-10   NTclustered gi|2523416575|emb|OX996782.1| 2697049 g26906 i0 100 1.65676567656766 42 0 14 0 21 62 17695 17654 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 502 78.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18362821 18362821 PRJNA546018_S_NODE_51375_length_211_cov_1.300000_g51050_i0 PRJNA546018 51375 211 1.3 2.743 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 54.7 0.005   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g51050 i0 100 0.137440758293839 29 0 14 0 1 29 58 86 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 29 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
32480946 32480946 PRJNA546018_S_NODE_6139_length_730_cov_8.167414_g5865_i0 PRJNA546018 6139 730 8.167414 59.6221222 Panax cryptic virus 4 2809267 Viruses Viruses 264 2.7e-82   NR QRG29207.1 2809267 g5865 i0 78.2 0.698630136986301 170 37 69.9 0 25 534 321 490 QRG29207.1 putative CP [Panax cryptic virus 4] diamond 510 264 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae   Panax cryptic virus 4

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;