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contig_metadata

14 rows where bioproject = "PRJNA546018" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 14 ✖

bioproject 1

  • PRJNA546018 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
510750 510750 PRJNA546018_S_NODE_19481_length_367_cov_8.591503_g19156_i0 PRJNA546018 19481 367 8.591503 31.53081601 Gonium pectorale 33097 Plants Plants 104 9.49e-18   NTclustered gi|459172117|ref|NC_020437.1| 33097 g19156 i0 90.909 4.0708446866485 77 7 21 0 63 139 9644 9720 Gonium pectorale mitochondrion, complete genome blastn 1494 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
2394687 2394687 PRJNA546018_S_NODE_40722_length_241_cov_22.761111_g40397_i0 PRJNA546018 40722 241 22.761111 54.85427751 Chlorophyta 3041 Plants Plants 117 7.58e-22   NTclustered gi|15281672|gb|AF395512.1| 51713 g40397 i0 97.101 35.2199170124481 69 2 29 0 11 79 1834 1902 Stephanosphaera sp. UTEX-LB 2409 strain UTEX LB 2409 26S ribosomal RNA gene, partial sequence blastn 8488 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Stephanosphaera Stephanosphaera sp. UTEX-LB 2409
3061813 3061813 PRJNA546018_S_NODE_30643_length_283_cov_2.581081_g30318_i0 PRJNA546018 30643 283 2.581081 7.30445923 Trentepohlia sp. YN1317 2907467 Plants Plants 316 8.39e-82   NTclustered gi|2172948447|gb|MZ334626.1| 2907467 g30318 i0 89.37 67.339222614841 254 24 90 2 1 254 49972 50222 Trentepohlia sp. YN1317 chloroplast, complete genome blastn 19057 316 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia sp. YN1317
8164104 8164104 PRJNA546018_S_NODE_51967_length_210_cov_1.691275_g51642_i0 PRJNA546018 51967 210 1.691275 3.5516775 Pseudochlorella signiensis 173497 Plants Plants 143 1.06e-29   NTclustered gi|2724824453|gb|PP746560.1| 173497 g51642 i0 82.609 19.147619047619 161 28 77 0 10 170 2568 2728 Pseudochlorella signiensis culture SAG:7.90 mitochondrion, complete genome blastn 4021 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
10715244 10715244 PRJNA546018_S_NODE_41969_length_237_cov_2.215909_g41644_i0 PRJNA546018 41969 237 2.215909 5.25170433 Koliella corcontica 155904 Plants Plants 69.4 2.11e-7   NTclustered gi|2724824266|gb|PP746555.1| 155904 g41644 i0 87.931 0.244725738396624 58 7 24 0 178 235 43099 43042 Koliella corcontica culture SAG:24.84 mitochondrion, complete genome blastn 58 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella corcontica
13872973 13872973 PRJNA546018_S_NODE_13351_length_460_cov_6.012531_g13027_i0 PRJNA546018 13351 460 6.012531 27.6576426 root 1 Root_unresolved Root_unresolved 63.9 2.06e-5   NTclustered gi|520624|emb|Z33463.1| 3140 g13027 i0 100 7.35652173913043 34 0 7 0 1 34 1104 1137 B.oerstedi gene for 18S rRNA blastn 3384 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Dasycladales Dasycladaceae Batophora Batophora oerstedii
19637131 19637131 PRJNA546018_S_NODE_32596_length_273_cov_2.849057_g32271_i0 PRJNA546018 32596 273 2.849057 7.77792561 Trebouxia sp. SL0000003 3350044 Plants Plants 359 1.32e-94   NTclustered gi|2917930141|emb|OZ234926.1| 3350044 g32271 i0 94.093 3.71428571428571 237 13 87 1 25 261 113208 112973 Trebouxia sp. SL0000003 genome assembly, organelle: mitochondrion blastn 1014 359 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
19637181 19637181 PRJNA546018_S_NODE_35816_length_259_cov_2.126263_g35491_i0 PRJNA546018 35816 259 2.126263 5.50702117 Picochlorum sp. 2812594 Plants Plants 102 2.31e-17   NTclustered gi|2632235332|gb|OR922714.1| 2812594 g35491 i0 92.958 23.8610038610039 71 4 27 1 1 70 3753 3823 Picochlorum sp. strain AGSB0128 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6180 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp.
20912899 20912899 PRJNA546018_S_NODE_26377_length_309_cov_3.487903_g26052_i0 PRJNA546018 26377 309 3.487903 10.77762027 uncultured Trebouxia photobiont 285713 Plants Plants 542 1.3999999999999995e-149   NTclustered gi|1273623725|gb|KY033354.1| 285713 g26052 i0 100 89.57928802589 293 0 95 0 1 293 6544 6252 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 27680 542 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
20913040 20913040 PRJNA546018_S_NODE_34717_length_263_cov_5.118812_g34392_i0 PRJNA546018 34717 263 5.118812 13.46247556 Coccomyxa sp. Obi 2315456 Plants Plants 420 5.71e-113   NTclustered gi|1601875646|gb|MK694759.1| 2315456 g34392 i0 95.437 100.794676806084 263 12 100 0 1 263 4550 4288 Coccomyxa sp. Obi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26509 420 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
22796399 22796399 PRJNA546018_S_NODE_32338_length_274_cov_5.769953_g32013_i0 PRJNA546018 32338 274 5.769953 15.80967122 Coccomyxa 41891 Plants Plants 291 4.9e-74   NTclustered gi|1360638129|gb|AC277064.1| 574566 g32013 i0 85.971 101.405109489051 278 32 100 6 1 274 1129 855 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 27785 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
24736893 24736893 PRJNA546018_S_NODE_30600_length_283_cov_4.914414_g30275_i0 PRJNA546018 30600 283 4.914414 13.90779162 Koliella longiseta 33092 Plants Plants 374 4.9099999999999985e-99   NTclustered gi|371782094|emb|HE610126.1| 33092 g30275 i0 92.366 93.2862190812721 262 20 93 0 22 283 4689 4950 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 26400 374 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
28151959 28151959 PRJNA546018_S_NODE_44645_length_229_cov_1.547619_g44320_i0 PRJNA546018 44645 229 1.547619 3.54404751 Micractinium sp. CCAP 211/92 554058 Plants Plants 43.9 0.0124   NR KAL4424952.1 554058 g44320 i0 32.8 1.51965065502183 58 32 76 1 11 184 373 423 KAL4424952.1 hypothetical protein ABPG77_009681 [Micractinium sp. CCAP 211/92] diamond 348 43.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium sp. CCAP 211/92
30741382 30741382 PRJNA546018_S_NODE_44554_length_229_cov_2.053571_g44229_i0 PRJNA546018 44554 229 2.053571 4.70267759 Trebouxia sp. A1-2 2608996 Plants Plants 43.9 0.0115   NR KAA6423816.1 2608996 g44229 i0 64.3 0.366812227074236 28 10 36.7 0 11 94 250 277 KAA6423816.1 MAG: light-harvesting of photosystem I [Trebouxia sp. A1-2] diamond 84 43.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;