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contig_metadata

14 rows where bioproject = "PRJNA546018", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 14 ✖

tax_clade 1

  • Sar · 14 ✖

bioproject 1

  • PRJNA546018 · 14 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3061657 3061657 PRJNA546018_S_NODE_20423_length_357_cov_5.513514_g20098_i0 PRJNA546018 20423 357 5.513514 19.68324498 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 634 2.6399999999999993e-177   NTclustered gi|166046642|emb|CU367759.1| 100861 g20098 i0 99.429 85.6302521008403 350 0 98 2 8 357 82 429 Aphanomyces euteiches cDNA blastn 30570 634 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3061716 3061716 PRJNA546018_S_NODE_24363_length_323_cov_249.083969_g24038_i0 PRJNA546018 24363 323 249.083969 804.54121987 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 580 3.129999999999999e-161   NTclustered gi|325194239|emb|FR825095.1| 890382 g24038 i0 99.375 103.417956656347 320 2 99 0 1 320 928 1247 Albugo laibachii Nc14, genomic contig CONTIG_1625_NC14_v4_1818_619 blastn 33404 580 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7497314 7497314 PRJNA546018_S_NODE_26086_length_311_cov_2.788000_g25761_i0 PRJNA546018 26086 311 2.788 8.67068 root 1 Root_unresolved Root_unresolved 507 5.16e-139   NTclustered gi|166046477|emb|CU367594.1| 100861 g25761 i0 97.959 142.900321543408 294 2 94 3 3 294 323 614 Aphanomyces euteiches cDNA blastn 44442 507 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
8772233 8772233 PRJNA546018_S_NODE_35787_length_259_cov_2.484848_g35462_i0 PRJNA546018 35787 259 2.484848 6.43575632 root 1 Root_unresolved Root_unresolved 427 3.349999999999999e-115   NTclustered gi|166046691|emb|CU367801.1| 100861 g35462 i0 100 89.3166023166023 231 0 89 0 22 252 115 345 Aphanomyces euteiches cDNA blastn 23133 427 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9439597 9439597 PRJNA546018_S_NODE_50308_length_213_cov_5.190789_g49983_i0 PRJNA546018 50308 213 5.190789 11.05638057 Peronospora alsinearum 162097 SAR_Eukaryotes SAR_Eukaryotes 364 2.119999999999999e-96   NTclustered gi|23306489|gb|AY035472.1| 162097 g49983 i0 100 92.4882629107981 197 0 92 0 1 197 263 67 Peronospora alsinearum isolate HV 6a large subunit ribosomal RNA gene, partial sequence blastn 19700 364 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora alsinearum
10047648 10047648 PRJNA546018_S_NODE_32108_length_276_cov_1.446512_g31783_i0 PRJNA546018 32108 276 1.446512 3.99237312 root 1 Root_unresolved Root_unresolved 490 4.54e-134   NTclustered gi|166044625|emb|CU367534.1| 100861 g31783 i0 100 33.4275362318841 265 0 96 0 10 274 238 502 Aphanomyces euteiches cDNA blastn 9226 490 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
10047738 10047738 PRJNA546018_S_NODE_49388_length_216_cov_1.329032_g49063_i0 PRJNA546018 49388 216 1.329032 2.87070912 root 1 Root_unresolved Root_unresolved 364 2.16e-96   NTclustered gi|166046726|emb|CU367836.1| 100861 g49063 i0 99.502 36.1481481481481 201 0 93 1 1 201 291 92 Aphanomyces euteiches cDNA blastn 7808 364 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
12598101 12598101 PRJNA546018_S_NODE_13830_length_450_cov_3.401028_g13505_i0 PRJNA546018 13830 450 3.401028 15.304626 root 1 Root_unresolved Root_unresolved 815 0   NTclustered gi|166046649|emb|CU367766.1| 100861 g13505 i0 99.554 99.8977777777778 448 1 99 1 1 448 768 322 Aphanomyces euteiches cDNA blastn 44954 815 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13264480 13264480 PRJNA546018_S_NODE_14371_length_440_cov_1.846966_g14046_i0 PRJNA546018 14371 440 1.846966 8.1266504 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 802 0   NTclustered gi|166046588|emb|CU367705.1| 100861 g14046 i0 99.545 54.6136363636364 440 2 100 0 1 440 77 516 Aphanomyces euteiches cDNA blastn 24030 802 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16421981 16421981 PRJNA546018_S_NODE_30493_length_284_cov_2.282511_g30168_i0 PRJNA546018 30493 284 2.282511 6.48233124 root 1 Root_unresolved Root_unresolved 438 1.7199999999999995e-118   NTclustered gi|166044479|emb|CU367388.1| 100861 g30168 i0 99.583 89.2640845070423 240 1 85 0 23 262 418 179 Aphanomyces euteiches cDNA blastn 25351 438 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18362709 18362709 PRJNA546018_S_NODE_44535_length_229_cov_2.267857_g44210_i0 PRJNA546018 44535 229 2.267857 5.19339253 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 363 8.309999999999999e-96   NTclustered gi|325193895|emb|FR824859.1| 890382 g44210 i0 98.077 0.908296943231441 208 4 91 0 22 229 2547 2754 Albugo laibachii Nc14, genomic contig CONTIG_1064_NC14_v4_3734_133 blastn 208 363 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21521247 21521247 PRJNA546018_S_NODE_27897_length_299_cov_2.852941_g27572_i0 PRJNA546018 27897 299 2.852941 8.53029359 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 553 6.25e-153   NTclustered gi|158519366|gb|EU054926.1| 123356 g27572 i0 100 93.9130434782609 299 0 100 0 1 299 317 19 Hyaloperonospora parasitica strain GG156 (MA) large subunit ribosomal RNA gene, partial sequence blastn 28080 553 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
21521300 21521300 PRJNA546018_S_NODE_37297_length_253_cov_2.932292_g36972_i0 PRJNA546018 37297 253 2.932292 7.41869876 root 1 Root_unresolved Root_unresolved 468 1.92e-127   NTclustered gi|166046619|emb|CU367736.1| 100861 g36972 i0 100 99.9920948616601 253 0 100 0 1 253 115 367 Aphanomyces euteiches cDNA blastn 25298 468 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24071320 24071320 PRJNA546018_S_NODE_7659_length_641_cov_5.879310_g7355_i0 PRJNA546018 7659 641 5.87931 37.6863771 root 1 Root_unresolved Root_unresolved 1077 0   NTclustered gi|166044488|emb|CU367397.1| 100861 g7355 i0 99.661 93.1716068642746 590 1 97 1 23 612 784 196 Aphanomyces euteiches cDNA blastn 59723 1083 0.994459833795014 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;