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contig_metadata

7 rows where bioproject = "PRJNA546018", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA546018 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1786850 1786850 PRJNA546018_S_NODE_59982_length_192_cov_2.496183_g59657_i0 PRJNA546018 59982 192 2.496183 4.79267136 Remanella sp. 1 BS-2022 2930476 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.017   NTclustered gi|2261269021|emb|OX095846.1| 2930476 g59657 i0 100 0.145833333333333 28 0 15 0 165 192 41 14 Remanella sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863273, clone N44:18S_rRNA::TRINITY_DN644_c0_g1_i12:99-1693(+) blastn 28 52.8 1 Eukaryota Sar   Ciliophora Karyorelictea Loxodida Loxodidae Remanella Remanella sp. 1 BS-2022
3670593 3670593 PRJNA546018_S_NODE_51883_length_210_cov_2.087248_g51558_i0 PRJNA546018 51883 210 2.087248 4.3832208 Vorticellidae 85904 SAR_Eukaryotes SAR_Eukaryotes 348 2.1e-91   NTclustered gi|309253768|gb|HM852985.1| 168244 g51558 i0 100 89.4809523809524 188 0 90 0 23 210 1410 1597 Carchesium polypinum isolate CRC14 small subunit ribosomal RNA gene, partial sequence blastn 18791 348 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Carchesium Carchesium polypinum
6888613 6888613 PRJNA546018_S_NODE_31786_length_277_cov_4.629630_g31461_i0 PRJNA546018 31786 277 4.62963 12.8240751 Coleps hirtus 60000 SAR_Eukaryotes SAR_Eukaryotes 484 2.1199999999999996e-132   NTclustered gi|2026535536|gb|MW929305.1| 60000 g31461 i0 98.195 100.888086642599 277 5 100 0 1 277 2517 2241 Coleps hirtus strain AG Berninger/Pickham Uni Salzburg small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27946 484 1 Eukaryota Sar   Ciliophora Prostomatea Prorodontida Colepidae Coleps Coleps hirtus
8163522 8163522 PRJNA546018_S_NODE_18307_length_381_cov_9.118750_g17982_i0 PRJNA546018 18307 381 9.11875 34.7424375 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 649 0   NTclustered gi|512134943|gb|JX178902.1| 1295638 g17982 i0 99.167 92.4068241469816 360 3 94 0 6 365 1346 987 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 35207 649 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
10714968 10714968 PRJNA546018_S_NODE_25029_length_318_cov_9.186770_g24704_i0 PRJNA546018 25029 318 9.18677 29.2139286 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 126 1.73e-24   NTclustered gi|71090023|gb|AY883859.1| 94289 g24704 i0 93.023 7.90880503144654 86 6 27 0 1 86 1475 1390 Sterkiella histriomuscorum alpha-tubulin gene, complete cds; macronuclear blastn 2515 126 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
11989640 11989640 PRJNA546018_S_NODE_25730_length_313_cov_13.571429_g25405_i0 PRJNA546018 25730 313 13.571429 42.47857277 Kentrophoros sp. 1 BS-2022 2930470 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.029   NTclustered gi|2261268989|emb|OX095830.1| 2930470 g25405 i0 100 0.0894568690095847 28 0 9 0 1 28 12 39 Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) blastn 28 52.8 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Kentrophoridae Kentrophoros Kentrophoros sp. 1 BS-2022
14539949 14539949 PRJNA546018_S_NODE_44272_length_230_cov_1.846154_g43947_i0 PRJNA546018 44272 230 1.846154 4.2461542 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g43947 i0 100 0.121739130434783 28 0 12 0 1 28 12 39 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 28 52.8 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;