RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA546018", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA546018 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10047730 10047730 PRJNA546018_S_NODE_47628_length_220_cov_2.905660_g47303_i0 PRJNA546018 47628 220 2.90566 6.392452 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 390 3.629999999999999e-104   NTclustered gi|378824466|ref|NC_016731.1| 1436140 g47303 i0 100 120.836363636364 211 0 96 0 1 211 67426 67216 Synedra acus chloroplast, complete genome blastn 26584 390 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Licmophorales Ulnariaceae Ulnaria Ulnaria acus
24071294 24071294 PRJNA546018_S_NODE_58219_length_199_cov_2.731884_g57894_i0 PRJNA546018 58219 199 2.731884 5.43644916 Hantzschia 186033 SAR_Eukaryotes SAR_Eukaryotes 305 1.2e-78   NTclustered gi|725539095|gb|KM407568.1| 186034 g57894 i0 97.74 88.8190954773869 177 4 89 0 2 178 321 145 Hantzschia amphioxys isolate Ant025-E04 28S ribosomal RNA gene, partial sequence blastn 17675 305 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Hantzschia Hantzschia amphioxys
29004696 29004696 PRJNA546018_S_NODE_30128_length_286_cov_2.235556_g29803_i0 PRJNA546018 30128 286 2.235556 6.39369016 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 56.6 7.3e-7   NR GKY94605.1 2872254 g29803 i0 59.5 1.09090909090909 37 15 38.8 0 286 176 270 306 GKY94605.1 hypothetical protein MPSEU_000426000 [Mayamaea pseudoterrestris] diamond 312 56.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;