RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA546018", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA546018 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14539680 14539680 PRJNA546018_S_NODE_28332_length_296_cov_6.331915_g28007_i0 PRJNA546018 28332 296 6.331915 18.7424684 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.027   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g28007 i0 100 0.0945945945945946 28 0 9 0 1 28 8 35 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
17088327 17088327 PRJNA546018_S_NODE_25214_length_317_cov_2.847656_g24889_i0 PRJNA546018 25214 317 2.847656 9.02706952 Dinema validum 2704078 Euglenozoa other_Eukaryota 54.7 0.008   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g24889 i0 100 0.17981072555205 29 0 9 0 1 29 4 32 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 57 54.7 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
29067531 29067531 PRJNA546018_S_NODE_20248_length_359_cov_4.516779_g19923_i0 PRJNA546018 20248 359 4.516779 16.21523661 Bodo saltans 75058 Euglenozoa other_Eukaryota 58.5 4.14e-7   NR CUG91007.1 75058 g19923 i0 40.6 0.844011142061281 101 52 79.4 4 50 334 290 388 CUG91007.1 guanylate cyclase, putative [Bodo saltans] diamond 303 58.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
31405287 31405287 PRJNA546018_S_NODE_29756_length_288_cov_2.612335_g29431_i0 PRJNA546018 29756 288 2.612335 7.5235248 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 43.5 0.0335   NR KAJ9468174.1 91374 g29431 i0 27.7 0.979166666666667 94 65 94.8 1 282 10 52 145 KAJ9468174.1 Metacaspase-1A [Diplonema papillatum] diamond 282 43.5 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;