RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA546018", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 5 ✖

tax_clade 1

  • Bacteria candidate phyla · 5 ✖

bioproject 1

  • PRJNA546018 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9439654 9439654 PRJNA546018_S_NODE_52928_length_209_cov_0.878378_g52603_i0 PRJNA546018 52928 209 0.878378 1.83581002 Candidatus Nanosynbacter sp. HMT-352 2899133 Bacteria Bacteria 213 7.940000000000002e-51   NTclustered gi|2218410560|gb|CP089288.1| 2899133 g52603 i0 96.154 4.36363636363636 130 5 62 0 80 209 152905 153034 Candidatus Nanosynbacter sp. HMT-352 strain TM7-037 chromosome blastn 912 213 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-352
10714930 10714930 PRJNA546018_S_NODE_23089_length_333_cov_6.360294_g22764_i0 PRJNA546018 23089 333 6.360294 21.17977902 Candidatus Saccharimonadia bacterium 2890869 Bacteria Bacteria 66.6 3.82e-10   NR HSX77214.1 2890869 g22764 i0 91.4 0.315315315315315 35 3 31.5 0 120 16 241 275 HSX77214.1 hypothetical protein [Candidatus Saccharimonadia bacterium] diamond 105 66.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia       Candidatus Saccharimonadia bacterium
29446130 29446130 PRJNA546018_S_NODE_48790_length_217_cov_2.365385_g48465_i0 PRJNA546018 48790 217 2.365385 5.13288545 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 149 1.6e-42   NR MBB1567446.1 2026720 g48465 i0 100 0.981566820276498 71 0 98.2 0 215 3 169 239 MBB1567446.1 NAD(P)-dependent oxidoreductase [Candidatus Saccharibacteria bacterium] diamond 213 149 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31911224 31911224 PRJNA546018_S_NODE_37597_length_252_cov_2.544503_g37272_i0 PRJNA546018 37597 252 2.544503 6.41214756 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 43.1 0.00546   NR NCC20000.1 2026720 g37272 i0 39.6 2.4047619047619 48 29 57.1 0 2 145 38 85 NCC20000.1 co-chaperone GroES [Candidatus Saccharibacteria bacterium] diamond 606 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32227811 32227811 PRJNA546018_S_NODE_51658_length_211_cov_0.866667_g51333_i0 PRJNA546018 51658 211 0.866667 1.82866737 Candidatus Nanosynbacter sp. 2725945 Bacteria Bacteria 131 5.05e-34   NR MBF1038120.1 2725945 g51333 i0 94.2 0.981042654028436 69 4 98.1 0 209 3 124 192 MBF1038120.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Candidatus Nanosynbacter sp.] diamond 207 131 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;