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contig_metadata

21 rows where bioproject = "PRJNA543299" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA543299 · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
509533 509533 PRJNA543299_P_NODE_14461_length_197_cov_1.851351_g14304_i0 PRJNA543299 14461 197 1.851351 3.64716147 Avellara fistulosa 1940801 Plants Plants 52.8 0.017   NTclustered gi|2918395469|emb|OZ238147.1| 1940801 g14304 i0 100 0.284263959390863 28 0 14 0 44 71 10220001 10219974 Avellara fistulosa genome assembly, chromosome: 6 blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Avellara Avellara fistulosa
1118542 1118542 PRJNA543299_P_NODE_5141_length_322_cov_6.600733_g4985_i0 PRJNA543299 5141 322 6.600733 21.25436026 Quercus 3511 Plants Plants 580 3.119999999999999e-161   NTclustered gi|1878849159|gb|MT796506.1| 38865 g4985 i0 99.375 99.3788819875776 320 2 99 0 3 322 2729 2410 Quercus petraea isolate DM324 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 32000 580 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus petraea
1784952 1784952 PRJNA543299_P_NODE_16022_length_187_cov_3.362319_g15865_i0 PRJNA543299 16022 187 3.362319 6.28753653 Quercus robur 38942 Plants Plants 340 3.0499999999999998e-89   NTclustered gi|2293066863|ref|XR_007649123.1| 38942 g15865 i0 99.465 100 187 1 100 0 1 187 3307 3121 PREDICTED: Quercus robur 28S ribosomal RNA (LOC126707822), rRNA blastn 18700 340 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
4336626 4336626 PRJNA543299_P_NODE_23304_length_164_cov_0.886957_g23147_i0 PRJNA543299 23304 164 0.886957 1.45460948 Quercus suber 58331 Plants Plants 298 1.59e-76   NTclustered gi|2743661911|ref|XM_024063294.2| 58331 g23147 i0 99.39 6.97560975609756 164 1 100 0 1 164 790 627 PREDICTED: Quercus suber uncharacterized LOC112030619 (LOC112030619), mRNA blastn 1144 298 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus suber
4946809 4946809 PRJNA543299_P_NODE_3364_length_393_cov_4.633721_g3212_i0 PRJNA543299 3364 393 4.633721 18.21052353 Quercus 3511 Plants Plants 721 0   NTclustered gi|1878849159|gb|MT796506.1| 38865 g3212 i0 99.746 100.002544529262 393 1 100 0 1 393 2859 3251 Quercus petraea isolate DM324 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 39301 721 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus petraea
6222249 6222249 PRJNA543299_P_NODE_11885_length_217_cov_1.440476_g11728_i0 PRJNA543299 11885 217 1.440476 3.12583292 root 1 Root_unresolved Root_unresolved 401 1.6499999999999994e-107   NTclustered gi|2037096431|gb|MW582695.1| 28930 g11728 i0 100 134.52534562212 217 0 100 0 1 217 90541 90325 Fagus sylvatica isolate FSYLV_37_PL_JAMY mitochondrion, complete genome blastn 29192 401 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Fagus Fagus sylvatica
6222253 6222253 PRJNA543299_P_NODE_17405_length_180_cov_1.320611_g17248_i0 PRJNA543299 17405 180 1.320611 2.3770998 Magnoliopsida 3398 Plants Plants 327 2.2699999999999996e-85   NTclustered gi|66969368|gb|DQ008780.1| 3429 g17248 i0 99.444 140.205555555556 180 1 100 0 1 180 1548 1369 Calycanthus floridus large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 25237 327 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Calycanthaceae Calycanthus Calycanthus floridus
7496783 7496783 PRJNA543299_P_NODE_20586_length_167_cov_0.864407_g20429_i0 PRJNA543299 20586 167 0.864407 1.44355969 Quercus 3511 Plants Plants 309 7.53e-80   NTclustered gi|2293057058|ref|XM_050402800.1| 38942 g20429 i0 100 69.5988023952096 167 0 100 0 1 167 870 1036 PREDICTED: Quercus robur glyceraldehyde-3-phosphate dehydrogenase, cytosolic (LOC126703720), mRNA blastn 11623 309 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
11321713 11321713 PRJNA543299_P_NODE_6369_length_291_cov_13.830579_g6213_i0 PRJNA543299 6369 291 13.830579 40.24698489 Eukaryota 2759 Plants Plants 538 1.6999999999999994e-148   NTclustered gi|1878849207|gb|MT796543.1| 3512 g6213 i0 100 100 291 0 100 0 1 291 1949 1659 Quercus rubra isolate DM598 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29100 538 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus rubra
12597643 12597643 PRJNA543299_P_NODE_10050_length_235_cov_1.053763_g9893_i0 PRJNA543299 10050 235 1.053763 2.47634305 Magnoliopsida 3398 Plants Plants 429 8.33e-116   NTclustered gi|2127863804|ref|NC_058644.1| 4217 g9893 i0 99.574 130 235 1 100 0 1 235 156443 156677 Arctium lappa mitochondrion, complete genome blastn 30550 429 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Arctium Arctium lappa
13872504 13872504 PRJNA543299_P_NODE_21811_length_166_cov_0.863248_g21654_i0 PRJNA543299 21811 166 0.863248 1.43299168 Gnetum 3380 Plants Plants 52.8 0.014   NTclustered gi|2689329997|dbj|LC783598.1| 33153 g21654 i0 100 0.337349397590361 28 0 17 0 26 53 39038 39065 Gnetum parvifolium Chaw1607 mitochondrial DNA, complete sequence, note: sequence_id: chr4 blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Gnetopsida Gnetales Gnetaceae Gnetum Gnetum parvifolium
17696590 17696590 PRJNA543299_P_NODE_3994_length_362_cov_10.105431_g3839_i0 PRJNA543299 3994 362 10.105431 36.58166022 Fagaceae 3503 Plants Plants 662 0   NTclustered gi|1878849207|gb|MT796543.1| 3512 g3839 i0 99.723 99.7237569060773 361 1 99 0 2 362 5300 4940 Quercus rubra isolate DM598 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 36100 662 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus rubra
18970171 18970171 PRJNA543299_P_NODE_10755_length_227_cov_7.859551_g10598_i0 PRJNA543299 10755 227 7.859551 17.84118077 Quercus 3511 Plants Plants 420 4.81e-113   NTclustered gi|1878849159|gb|MT796506.1| 38865 g10598 i0 100 100.330396475771 227 0 100 0 1 227 4309 4535 Quercus petraea isolate DM324 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22775 420 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus petraea
20245103 20245103 PRJNA543299_P_NODE_5956_length_300_cov_4.756972_g5800_i0 PRJNA543299 5956 300 4.756972 14.270916 Quercus 3511 Plants Plants 555 1.7399999999999995e-153   NTclustered gi|1878849159|gb|MT796506.1| 38865 g5800 i0 100 100.006666666667 300 0 100 0 1 300 83 382 Quercus petraea isolate DM324 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 30002 555 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus petraea
21520701 21520701 PRJNA543299_P_NODE_24637_length_162_cov_1.707965_g24480_i0 PRJNA543299 24637 162 1.707965 2.7669033 Streptophyta 35493 Plants Plants 272 9.51e-69   NTclustered gi|2306646691|gb|OK323375.1| 4639 g24480 i0 98.701 177.172839506173 154 0 94 2 1 153 111130 110978 Ensete ventricosum cultivar Bedadeti chloroplast, complete genome blastn 28702 272 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Ensete Ensete ventricosum
22186404 22186404 PRJNA543299_P_NODE_20638_length_167_cov_0.864407_g20481_i0 PRJNA543299 20638 167 0.864407 1.44355969 Quercus lobata 97700 Plants Plants 298 1.63e-76   NTclustered gi|1757564352|ref|XM_031104873.1| 97700 g20481 i0 98.802 36.4610778443114 167 2 100 0 1 167 1257 1423 PREDICTED: Quercus lobata putative ABC transporter C family member 15 (LOC115982314), mRNA blastn 6089 298 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus lobata
24070611 24070611 PRJNA543299_P_NODE_22199_length_165_cov_0.879310_g22042_i0 PRJNA543299 22199 165 0.87931 1.4508615 Magnoliopsida 3398 Plants Plants 292 7.47e-75   NTclustered gi|1198229794|emb|LT855379.1| 3505 g22042 i0 98.78 103.769696969697 164 2 99 0 1 164 473441 473278 Betula pendula genome assembly, organelle: mitochondrion blastn 17122 292 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Betula Betula pendula
24735605 24735605 PRJNA543299_P_NODE_22600_length_165_cov_0.879310_g22443_i0 PRJNA543299 22600 165 0.87931 1.4508615 Triticum aestivum 4565 Plants Plants 283 4.4899999999999995e-72   NTclustered gi|1282798539|gb|MG560142.1| 4565 g22443 i0 97.576 10.9333333333333 165 4 100 0 1 165 1109388 1109224 Triticum aestivum omega gliadin-D1, omega gliadin-D2, omega gliadin-D3, gamma gliadin-D1, delta gliadin-D1, gamma gliadin-D2, gamma gliadin-D3, gamma gliadin-D4, LMW-D1, LMW-D2, LMW-D3, LMW-D6, and LMW-D7 genes, complete cds blastn 1804 283 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
29351641 29351641 PRJNA543299_P_NODE_12549_length_211_cov_1.654321_g12392_i0 PRJNA543299 12549 211 1.654321 3.49061731 Shorea laevis 152420 Plants Plants 40.4 0.0365   NR GLT50214.1 152420 g12392 i0 44.2 0.611374407582938 43 22 61.1 1 158 30 7 47 GLT50214.1 hypothetical protein SLA2020_237160 [Shorea laevis] diamond 129 40.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Dipterocarpaceae Shorea Shorea laevis
31278476 31278476 PRJNA543299_P_NODE_14715_length_195_cov_9.006849_g14558_i0 PRJNA543299 14715 195 9.006849 17.56335555 Calluna vulgaris 13385 Plants Plants 40 0.0367   NR CAM5845482.1 13385 g14558 i0 42.2 0.692307692307692 45 16 69.2 1 166 32 34 68 CAM5845482.1 unnamed protein product [Calluna vulgaris] diamond 135 40 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris
31310124 31310124 PRJNA543299_P_NODE_17375_length_180_cov_1.557252_g17218_i0 PRJNA543299 17375 180 1.557252 2.8030536 Arachis hypogaea 3818 Plants Plants 43.1 0.00314   NR RYQ90665.1 3818 g17218 i0 72 0.416666666666667 25 7 41.7 0 3 77 80 104 RYQ90665.1 hypothetical protein Ahy_B09g096697 [Arachis hypogaea] diamond 75 43.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Arachis Arachis hypogaea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;