RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA543299" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA543299 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27377512 27377512 PRJNA543299_P_NODE_25843_length_161_cov_0.910714_g25686_i0 PRJNA543299 25843 161 0.910714 1.46624954 Pseudomonadati 3379134 Bacteria Bacteria 63.2 9.21e-11   NR MCC6931154.1 2026741 g25686 i0 62.5 4.60248447204969 48 18 89.4 0 144 1 46 93 MCC6931154.1 GatB/YqeY domain-containing protein [Gemmatimonadaceae bacterium] diamond 741 63.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27804610 27804610 PRJNA543299_P_NODE_21524_length_166_cov_0.871795_g21367_i0 PRJNA543299 21524 166 0.871795 1.4471797 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 48.5 1.21e-4   NR MBK8246539.1 2026742 g21367 i0 44 0.903614457831325 50 28 90.4 0 165 16 384 433 MBK8246539.1 AAA family ATPase [Gemmatimonadota bacterium] diamond 150 48.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31405278 31405278 PRJNA543299_P_NODE_8936_length_248_cov_27.105528_g8779_i0 PRJNA543299 8936 248 27.105528 67.22170944 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.1 0.0284   NR HKH82792.1 2448054 g8779 i0 33.3 0.834677419354839 69 43 83.5 1 12 218 259 324 HKH82792.1 APC family permease [Gemmatimonadales bacterium] diamond 207 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;