RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA543299" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA543299 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18361165 18361165 PRJNA543299_P_NODE_21335_length_166_cov_0.871795_g21178_i0 PRJNA543299 21335 166 0.871795 1.4471797 Eimeria praecox 51316 SAR_Eukaryotes SAR_Eukaryotes 274 2.73e-69   NTclustered gi|2638822883|emb|OY986962.1| 51316 g21178 i0 96.407 151.186746987952 167 4 100 2 1 166 24407 24242 Eimeria praecox genome assembly, organelle: plastid:chloroplast blastn 25097 274 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria praecox
24735536 24735536 PRJNA543299_P_NODE_18840_length_173_cov_1.233871_g18683_i0 PRJNA543299 18840 173 1.233871 2.13459683 Atoxoplasma sp. MS-2003 241650 SAR_Eukaryotes SAR_Eukaryotes 169 1.38e-37   NTclustered gi|34923210|gb|AY283857.1| 241650 g18683 i0 91.2 69.5433526011561 125 9 72 1 49 173 1321 1443 Atoxoplasma sp. MS-2003 large subunit ribosomal RNA gene, partial sequence blastn 12031 169 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Atoxoplasma Atoxoplasma sp. MS-2003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;