RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA543299", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA543299 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17087151 17087151 PRJNA543299_P_NODE_21654_length_166_cov_0.871795_g21497_i0 PRJNA543299 21654 166 0.871795 1.4471797 Treponema socranskii 53419 Bacteria Bacteria 274 2.73e-69   NTclustered gi|2265187740|gb|CP054258.1| 69713 g21497 i0 96.386 2.98192771084337 166 6 100 0 1 166 2028295 2028130 Treponema socranskii subsp. buccale strain ATCC 35534 chromosome, complete genome blastn 495 274 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema socranskii
28657074 28657074 PRJNA543299_P_NODE_24947_length_162_cov_0.902655_g24790_i0 PRJNA543299 24947 162 0.902655 1.4623011 Spirochaetota bacterium 2202144 Bacteria Bacteria 45.8 0.001   NR TXH08964.1 2202144 g24790 i0 72.1 0.796296296296296 43 12 79.6 0 3 131 214 256 TXH08964.1 MAG: hypothetical protein E6R04_09725, partial [Spirochaetota bacterium] diamond 129 45.8 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
29509353 29509353 PRJNA543299_P_NODE_16610_length_184_cov_2.496296_g16453_i0 PRJNA543299 16610 184 2.496296 4.59318464 Spirochaetota bacterium 2202144 Bacteria Bacteria 80.5 2.71e-16   NR TXG86435.1 2202144 g16453 i0 63.9 1.98913043478261 61 22 99.5 0 184 2 169 229 TXG86435.1 MAG: DUF932 domain-containing protein [Spirochaetota bacterium] diamond 366 80.5 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
32495760 32495760 PRJNA543299_P_NODE_24199_length_163_cov_0.894737_g24042_i0 PRJNA543299 24199 163 0.894737 1.45842131 Turneriella 338321 Bacteria Bacteria 109 4.3e-26   NR MBN8220942.1 2202144 g24042 i0 88.7 2.92638036809816 53 6 97.5 0 161 3 1765 1817 MBN8220942.1 Ig-like domain-containing protein [Spirochaetota bacterium] diamond 477 110 0.990909090909091 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;