RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA543299", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA543299 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27077901 27077901 PRJNA543299_P_NODE_24882_length_162_cov_0.902655_g24725_i0 PRJNA543299 24882 162 0.902655 1.4623011 Bdellovibrionales bacterium RIFOXYD1_FULL_53_11 1797403 Bacteria Bacteria 48.9 8.11e-5   NR OFZ80863.1 1797403 g24725 i0 56.1 1.7037037037037 41 18 75.9 0 36 158 12 52 OFZ80863.1 MAG: hypothetical protein A2583_03915 [Bdellovibrionales bacterium RIFOXYD1_FULL_53_11] diamond 276 48.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYD1_FULL_53_11
27394143 27394143 PRJNA543299_P_NODE_25163_length_162_cov_0.902655_g25006_i0 PRJNA543299 25163 162 0.902655 1.4623011 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 75.5 2.8e-14   NR MBX3017006.1 2026715 g25006 i0 70 0.925925925925926 50 15 92.6 0 151 2 206 255 MBX3017006.1 alpha/beta hydrolase fold domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 150 75.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29540884 29540884 PRJNA543299_P_NODE_25690_length_161_cov_0.910714_g25533_i0 PRJNA543299 25690 161 0.910714 1.46624954 Oligoflexia bacterium 2599941 Bacteria Bacteria 94.4 7.44e-21   NR MDZ4677984.1 2599941 g25533 i0 84.9 0.987577639751553 53 8 98.8 0 2 160 426 478 MDZ4677984.1 L-aspartate oxidase [Oligoflexia bacterium] diamond 159 94.4 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30362680 30362680 PRJNA543299_P_NODE_23772_length_163_cov_0.894737_g23615_i0 PRJNA543299 23772 163 0.894737 1.45842131 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 96.3 1.7e-21   NR MBX3018591.1 2026715 g23615 i0 79.2 0.975460122699387 53 11 97.5 0 3 161 775 827 MBX3018591.1 carbamoyl-phosphate synthase large subunit [Pseudobdellovibrionaceae bacterium] diamond 159 96.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;