RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA543299" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA543299 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7496789 7496789 PRJNA543299_P_NODE_27226_length_151_cov_2.460784_g27069_i0 PRJNA543299 27226 151 2.460784 3.71578384 Cetobacterium 180162 Bacteria Bacteria 274 2.42e-69   NTclustered gi|2865368125|gb|CP122294.1| 188913 g27069 i0 99.338 501.158940397351 151 1 100 0 1 151 278475 278625 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 75675 274 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
18970177 18970177 PRJNA543299_P_NODE_19215_length_171_cov_1.713115_g19058_i0 PRJNA543299 19215 171 1.713115 2.92942665 Cetobacterium 180162 Bacteria Bacteria 316 4.6e-82   NTclustered gi|2865368125|gb|CP122294.1| 188913 g19058 i0 100 509.994152046784 171 0 100 0 1 171 279267 279097 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 87209 316 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;