RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA543299" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA543299 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3669950 3669950 PRJNA543299_P_NODE_8543_length_254_cov_1.429268_g8386_i0 PRJNA543299 8543 254 1.429268 3.63034072 Tetradesmus 91192 Plants Plants 459 1.1599999999999999e-124   NTclustered gi|356494235|gb|JN169784.1| 3088 g8386 i0 99.213 99.7086614173228 254 2 100 0 1 254 566 313 Scenedesmus obliquus isolate RAIW04 large subunit ribosomal RNA gene, partial sequence blastn 25326 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
6222250 6222250 PRJNA543299_P_NODE_12085_length_215_cov_1.614458_g11928_i0 PRJNA543299 12085 215 1.614458 3.4710847 Scenedesmaceae 3086 Plants Plants 381 2.1299999999999996e-101   NTclustered gi|2581663370|gb|OR350844.1| 3062090 g11928 i0 98.605 131.706976744186 215 3 100 0 1 215 106736 106522 Coccoidesmus tetrasporum chloroplast, complete genome blastn 28317 381 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coccoidesmus Coccoidesmus tetrasporum
13263574 13263574 PRJNA543299_P_NODE_7051_length_278_cov_1.336245_g6894_i0 PRJNA543299 7051 278 1.336245 3.7147611 Corbierea radiosa 51318 Plants Plants 501 2.11e-137   NTclustered gi|18654306|gb|L42987.1|RTCCPRGOLB 51318 g6894 i0 99.281 135.086330935252 278 1 100 1 1 278 545 821 Carteria radiosa large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product blastn 37554 501 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Corbierea Corbierea radiosa
13872505 13872505 PRJNA543299_P_NODE_22131_length_165_cov_0.879310_g21974_i0 PRJNA543299 22131 165 0.87931 1.4508615 Chlorellaceae 35461 Plants Plants 272 9.73e-69   NTclustered gi|1768906865|gb|MN128434.1| 3078 g21974 i0 96.914 200.018181818182 162 5 98 0 4 165 51297 51136 Auxenochlorella pyrenoidosa isolate FACHB-5 chloroplast, complete genome blastn 33003 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;