RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA543299", tax_clade = "Sar" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA543299 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19635575 19635575 PRJNA543299_P_NODE_11316_length_222_cov_1.167630_g11159_i0 PRJNA543299 11316 222 1.16763 2.5921386 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 411 2.8199999999999996e-110   NTclustered gi|1389430803|gb|MH341631.1| 1938391 g11159 i0 100 42.0405405405405 222 0 100 0 1 222 366 145 Chilodonella hexasticha strain C. hexasticha SC large subunit ribosomal RNA gene, partial sequence blastn 9333 411 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
23461774 23461774 PRJNA543299_P_NODE_16279_length_186_cov_1.642336_g16122_i0 PRJNA543299 16279 186 1.642336 3.05474496 Epicarchesium granulatum 3242921 SAR_Eukaryotes SAR_Eukaryotes 339 1.0899999999999998e-88   NTclustered gi|2788414624|gb|PQ195591.1| 3242921 g16122 i0 99.459 99.0645161290323 185 1 99 0 1 185 92 276 Epicarchesium granulatum isolate WT2021061001 large subunit ribosomal RNA gene, partial sequence blastn 18426 339 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Epicarchesium Epicarchesium granulatum
25344969 25344969 PRJNA543299_P_NODE_19440_length_170_cov_1.669421_g19283_i0 PRJNA543299 19440 170 1.669421 2.8380157 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 315 1.64e-81   NTclustered gi|10782|emb|X54004.1| 5908 g19283 i0 100 90.8352941176471 170 0 100 0 1 170 2969 3138 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 15442 315 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;