RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA543299", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA543299 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1784934 1784934 PRJNA543299_P_NODE_15122_length_193_cov_1.159722_g14965_i0 PRJNA543299 15122 193 1.159722 2.23826346 Encyonema minutum 431330 SAR_Eukaryotes SAR_Eukaryotes 357 3.1499999999999996e-94   NTclustered gi|168145881|emb|AM710515.1| 431330 g14965 i0 100 89.6787564766839 193 0 100 0 1 193 18 210 Encyonema minutum partial 28S rRNA gene, strain AT-137.13 blastn 17308 357 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Cymbellaceae Encyonema Encyonema minutum
18970189 18970189 PRJNA543299_P_NODE_8835_length_250_cov_1.218905_g8678_i0 PRJNA543299 8835 250 1.218905 3.0472625 Encyonema 216746 SAR_Eukaryotes SAR_Eukaryotes 449 6.87e-122   NTclustered gi|168145699|emb|AM501961.1| 431330 g8678 i0 99.197 99.612 249 2 99 0 1 249 109 357 Encyonema minutum 18S rRNA gene, strain AT-137.13 blastn 24903 449 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Cymbellaceae Encyonema Encyonema minutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;