RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA543299", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA543299 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32354477 32354477 PRJNA543299_P_NODE_25159_length_162_cov_0.902655_g25002_i0 PRJNA543299 25159 162 0.902655 1.4623011 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 89 6.31e-19   NR MBP6342945.1 2035772 g25002 i0 78.8 0.962962962962963 52 11 96.3 0 6 161 270 321 MBP6342945.1 uroporphyrinogen-III C-methyltransferase [Candidatus Omnitrophota bacterium] diamond 156 89 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32512718 32512718 PRJNA543299_P_NODE_20339_length_167_cov_0.864407_g20182_i0 PRJNA543299 20339 167 0.864407 1.44355969 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 68.2 8.82e-13   NR MDD5355944.1 2035772 g20182 i0 53.7 0.970059880239521 54 25 97 0 5 166 68 121 MDD5355944.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 162 68.2 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;